FastQCFastQC Report
Sat 16 Sept 2023
SRR15513175_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513175_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31175526
Total Bases932.6 Mbp
Sequences flagged as poor quality0
Sequence length1-51
%GC68

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGCCGAATCCCGGGGCCGAGGGAGCG17545125.627850513251966No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGA11884923.8122596552180066No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT9105362.9206756607731332No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGG7688872.4663160454774684No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAG7310802.3450446353334984No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGC6588042.1132089319038276No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG6309922.0239979270919117No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC6174831.980665859495041No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGG5752531.8452070383672117No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG4912791.5758483112682686No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT4607011.4777649621693634No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG4585531.4708749420940004No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG4519801.449791095746067No Hit
AACGATGCCGACCGGCGATGCGGCGGCG3942381.2645752953775342No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGG3838361.231209378792839No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG3480541.1164334484685199No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG2659370.8530313169375234No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG2546960.8169741867386617No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCG2532130.8122172501596284No Hit
AAACGATGCCGACCGGCGATGCGGCGGCG2206680.7078244646136844No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT2058370.6602518911789973No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2055320.6592735596506054No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG2035820.6530186531576083No Hit
ATTGATCATCGACACTTCGAACGCA1985120.6367558962758159No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG1912330.613407453012982No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG1906700.6116015492409014No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAG1878110.602430894028861No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT1606550.5153241039140767No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGA1526310.4895859656064825No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGG1360980.4365539814789332No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAG1350470.43318274726142547No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA1225670.393151345706244No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGC1172920.37623102173159806No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGA1147720.3681477579560326No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA1059070.33971199074556113No Hit
TTGATCATCGACACTTCGAACGCA1044650.33508656758509864No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC907790.29118674693732516No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGA881850.2828661174794613No Hit
AAACCTGCATTAAAAATTTCGGTTGGG847380.27180936738645567No Hit
CTAAACCATTCGTAGACGACCTGCTT819140.2627509797268537No Hit
ATTGATCATCGACACTTCGAACGCAC808010.25918087155931224No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC790170.25345843402930873No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG777920.24952906969396443No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCG777430.24937189512055066No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG776400.2490415077519462No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG767470.24617708134258906No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGG756040.24251074384438612No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAT746510.23945385877370604No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGG739350.2371571854152517No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGG733070.2351427847600711No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCG729440.233978409859067No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGA708600.22729367902244857No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCG687850.2206378169850286No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTC672420.21568842174467243No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT664560.21316721328134128No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGA628850.2017127152882681No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCG625810.20073759140423164No Hit
TTGATCATCGACACTTCGAACGCAC616730.19782505032954373No Hit
CGGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG609140.19539044826380794No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAG571370.18327517553352587No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTT553610.17757839915836543No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC510690.16381118958506105No Hit
CACTCGCCGAATCCCGGGGCCGAGGGA501320.16080562682406707No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGGA500090.16041108656835493No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAG490270.1572611798113687No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAGGCCC473150.15176969267495277No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC472560.15158044165798518No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGC471660.1512917536660007No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGGAAG449260.14410663030994247No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGC448920.14399757040185945No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGA444760.14266319035002006No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT441280.14154693011434674No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC440890.14142183198448682No Hit
GCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG437710.14040180107947497No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGC429910.13789983848227613No Hit
CTCTAGCATCACCAGTATTAGAGG396470.12717347575787494No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATT393030.12607004609962313No Hit
ATTGATCATCGACACTTCGAACGC377820.12119121903508541No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCG377570.12111102792620083No Hit
TTTTCACTGACCCGGTGAGGCGGGG374890.12025137923895815No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGA362950.11642145187863069No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC350610.11246321874408792No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT350560.112447180522311No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGAAG350000.11226755243840955No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAA345340.11077279016880101No Hit
AGCCCGTGGACGGTGTGAGGCCGGT341430.1095186012258462No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCG340230.10913368390320022No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGAAG339630.10894122524187724No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC327950.10519469663478972No Hit
CGCCGGGTTAAGGCGCCCGATGCCGACGCT323870.10388597773779343No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC322900.10357483623532125No Hit
AACCTGCATTAAAAATTTCGGTTGGG320030.10265424230532631No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGG314050.10073607098080718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)