FastQCFastQC Report
Sat 16 Sept 2023
SRR15513177_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513177_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34820418
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length1-51
%GC68

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGCCGAATCCCGGGGCCGAGGGAGCG14890614.27640185135055No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAG12740533.6589250594292118No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT12554763.6055741777712145No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGG8995472.583389435474324No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGA8959522.5730650332801863No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC8618412.475102395381928No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGG8262002.3727457838099473No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGC6326521.8168994984494442No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG6305401.8108340916527768No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG5942921.7067342500023979No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG4424141.2705591299909151No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGG3924471.1270599910661614No Hit
AACGATGCCGACCGGCGATGCGGCGGCG3917291.1249979825055516No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG3857551.1078413820305086No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG3473110.9974348958131405No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAG3030500.8703226940009738No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT2979270.8556100618895499No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT2685860.7713462830917194No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGG2628140.7547698020167363No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG2543830.7305569967597747No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG2458900.7061661350532897No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGG2432460.698572889044583No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT2407230.6913271403002686No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG2340090.6720453499438175No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2246350.6451243635271696No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCG2042980.5867189762052828No Hit
CACTCGCCGAATCCCGGGGCCGAGGGA1924760.5527676319106796No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG1868360.5365702387604881No Hit
AAACGATGCCGACCGGCGATGCGGCGGCG1775870.5100082371211052No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG1467620.4214825910475859No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTC1256320.3607998042987307No Hit
ATTGATCATCGACACTTCGAACGCA1176240.33780180352803346No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGA1153060.33114478981843354No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGGA1146270.32919478450833073No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAG1044490.29996480800431513No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGC1011830.2905852537439384No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGA983220.28236881016189985No Hit
GAGGGCGCACCACCGGCCCGTCTCGC956630.27473248597992134No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG947550.27212482055786924No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGG849150.24386553889157794No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGG827740.23771684762658507No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGA785340.22554008398176037No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGA771240.22149073569421251No Hit
CGGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG762710.21904102357415697No Hit
AAACCTGCATTAAAAATTTCGGTTGGG737150.2117005028486447No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCG727740.2089980654453947No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGG727180.20883724026518005No Hit
TTGATCATCGACACTTCGAACGCA719110.20651963454315797No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG706920.20301881499527086No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGGAAG636380.1827605860446592No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT630220.18099150906229788No Hit
ATTGATCATCGACACTTCGAACG555430.1595127318689856No Hit
ATTGATCATCGACACTTCGAACGC547570.15725543558954405No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC542490.15579652145473957No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG535450.15377471918918378No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCG526330.15115556625425922No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG510740.14667830811221164No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA494100.14189950275726157No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT488810.14038027917987658No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA472990.13583696783881227No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTT470770.13519941087438986No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATT468860.13465088213472912No Hit
CACTCGCCGAATCCCGGGGCCGAGGG459520.13196854787900594No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAG445330.12789335268749502No Hit
ATTGATCATCGACACTTCGAACGCAC444520.1276607305518274No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCG442710.1271409205943478No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCG421890.121161670144224No Hit
GCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG420510.12076535095012358No Hit
AACGATGCCGACCGGCGATGCGGCGGC420070.12063898830852633No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGA414050.11891011762121867No Hit
TTTTCACTGACCCGGTGAGGCGGGG408550.1173305846012532No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCG400800.11510487898221096No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCG389920.11198027548089745No Hit
CGCTTCTGGCGCCAAGCGCCCGG385450.11069654591739823No Hit
CTCTAGCATCACCAGTATTAGAGG382580.10987231686879807No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGGAAGGCCC378470.10869197492115114No Hit
ACGATGCCGACCGGCGATGCGGCGGCG378430.10868048740827867No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC365680.10501884268017689No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC362960.10423769180484851No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGG360600.10355992854537244No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGAAG358040.10282472772153396No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGAAG357820.10276154640073533No Hit
TTGATCATCGACACTTCGAACGCAC352830.10132847916989395No Hit
TCGCTTCTGGCGCCAAGCGCCCGG352760.1013083760223671No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAG350140.10055594392921992No Hit
GCCGCGACCGGCTCCGGGACGGCTGGG348380.10005049336283098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)