FastQCFastQC Report
Sat 16 Sept 2023
SRR15513178.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513178.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40716277
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length1-51
%GC66

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATT40279639.892758613465569No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG27686836.799941458301799No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC18327344.501231780106025No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC12213532.9996676759026863No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT8157432.003481310435136No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCG8030571.972324237798068No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGA7101041.7440297893640915No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG6882001.6902331222474No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG6829581.677358664202034No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG6687781.6425322973414294No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG6482611.5921421302836702No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG6040741.4836179643831386No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGG3839320.9429447589228259No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG3767050.9251951007210213No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT3644440.895081836681679No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGG3305450.8118252069068103No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG3298510.8101207288672292No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC2912030.7152004590203569No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGC2561310.629062917515764No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG2289840.5623893363334767No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTC1953130.4796926791710352No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG1881650.4621370465673962No Hit
ATTGATCATCGACACTTCGAACGCA1607570.3948224441050934No Hit
AAACGATGCCGACCGGCGATGCGGCGGCG1524300.37437116365035045No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATT1466340.36013607039759554No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC1461520.35895226864676255No Hit
CGGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG1376320.33802697628764045No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1352090.33207603927048635No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCG1181430.29016159802626357No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAG1163540.2857677778348939No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC1143650.28088275359753545No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGG1087710.2671437764312292No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG1065540.26169877958144355No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGA1019360.2503568781595626No Hit
AACGATGCCGACCGGCGATGCGGCGGCG1005450.24694055401971057No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG979870.24065805427151407No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG964080.23677999832843263No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG937930.23035750542712932No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGG885290.21742901493670452No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT857620.21063320696044974No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGA834480.20494997614835955No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT803870.19743209822450122No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCG762600.18729610273552272No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTG729350.1791298354709592No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGG690860.16967661360590508No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC675500.16590416653271123No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGA647620.1590567821316276No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC629230.15454016092876074No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG620920.15249920811767737No Hit
AGGGCGCCCTGGAATGGGTTCGCCCCGAGAGAGGGGCCCGT543630.13351662776044088No Hit
TTGATCATCGACACTTCGAACGCA534470.13126691322981224No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGA528390.12977365293000634No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGG525500.12906386308355255No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCG515880.1267011716223465No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCG513940.1262247036977374No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGC491790.12078461888841163No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCG480890.11810755683777277No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGC479990.11788651501707782No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGA458600.1126330877452278No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT453090.11127982059852869No Hit
GAACCCCATTCGTGATGGGGATCGGGGATT423340.10397316041444556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)