FastQCFastQC Report
Sat 16 Sept 2023
SRR15513188.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513188.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26382327
Total Bases762 Mbp
Sequences flagged as poor quality0
Sequence length1-51
%GC66

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG12703884.8152992721225845No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC10742564.071877359415642No Hit
AACGATGCCGACCGGCGATGCGGCGGCG6987502.6485533289008205No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC6353012.408055210596093No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCG5511212.0889779737776735No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG5464812.071390442548908No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3913871.483519630394999No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGA3377391.2801713813948254No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG3236381.226722722373959No Hit
AAACGATGCCGACCGGCGATGCGGCGGCG2979601.1293924148540802No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT2731731.03543936818007No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG2230480.8454447554986336No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG2187100.8290019299662231No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGC1861900.7057375947163418No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAG1825370.6918912042899021No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG1705180.6463341918247014No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1678200.6361076488817684No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT1677830.6359674034818839No Hit
GAGGGCGCACCACCGGCCCGTCTCGC1559940.5912821867456953No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC1526040.5784326757832999No Hit
TCGCTTCTGGCGCCAAGCGCCCGG1445750.5479994240083522No Hit
ACGATGCCGACCGGCGATGCGGCGGCG1416250.5368176961797191No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGG1337430.5069416355880966No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG1118720.42404144259147425No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC1081480.40992593261390475No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGG1025040.38853282350719104No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCG1024760.3884266918532243No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGG940930.3566516327388407No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG938080.3555713641181083No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGG906740.3436921997062655No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC852110.3229851559341221No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG799660.3031044228964337No Hit
CGACTGCATAATTTGTGGTAGTGGGG763000.2892087570592238No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGG757320.28705580065018527No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG748850.283845318117693No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC733230.27792468799283704No Hit
GACTGCATAATTTGTGGTAGTGGGG730600.2769278085287928No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAG727840.2758816536539783No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGC727720.2758361686594211No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC713260.27035522681528434No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC687500.26059111465034906No Hit
CGACTGCATAATTTGTGGTAGTGGGGG618810.2345547456825927No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC562090.21305550492191233No Hit
ATTGATCATCGACACTTCGAACGCA553220.20969340574089618No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG544990.20657389319751815No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG518300.19645727232476495No Hit
CTAAACCATTCGTAGACGACCTGCTT486080.1842445512861697No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGG470860.17847553780983763No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG466080.17666371885997775No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCG450970.1709363999619897No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT422600.16018298916543638No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGA407190.15434195778105547No Hit
GCACCACCGGCCCGTCTCGC399270.15133994814028345No Hit
CGCTTCTGGCGCCAAGCGCCCGG394540.14954708127148905No Hit
GACCTGGTATTGCAGTACCTCCAGG391060.14822801642933164No Hit
GACTGCATAATTTGTGGTAGTGGGGG368420.13964651412288231No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGA368060.13951005913921088No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGT343880.1303448327359448No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG342560.1298444977958161No Hit
ATTGATCATCGACACTTCGAACGCAC338850.1284382533807575No Hit
TTGATCATCGACACTTCGAACGCA336600.1275854097328109No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG334410.12675530858214287No Hit
TCGACTGCATAATTTGTGGTAGTGGGG314990.11939432029631047No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCG308160.11680546602276592No Hit
CGCCGCGACCGGCTCCGGGACGGCTGGGA308060.11676756186063497No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGA305850.11592987987754076No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG304550.11543712576983828No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTT303030.11486098250544768No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGGG293210.11113879378418742No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCG286040.10842106535939759No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC284370.10778806585181057No Hit
CGCTTCTGGCGCCAAGCGCCCGGC282050.10690868929037231No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC281670.10676465347427466No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGA281110.10655239016634128No Hit
AAACCTGCATTAAAAATTTCGGTTGGG272810.1034063447094716No Hit
AACGATGCCGACCGGCGATGCGGCGGC270730.10261793813714765No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAG270370.10248148315347619No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC267090.1012382266355807No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGA264070.10009352093922572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)