FastQCFastQC Report
Sat 16 Sept 2023
SRR15513192_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513192_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31416239
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length35-50
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNN23197557.383936059309964No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN19574326.230637601146337No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNN16692145.313220338055106No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGNNN9254702.9458332042864837No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN8786022.7966492106200236No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNN6478982.06230287463754No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGN4335771.380104728640497No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN3612161.149774802769994No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGNNNN3251391.034939287290245No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTN2668270.8493282725535669No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG2479350.7891937669560001No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN2462530.7838398479206884No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGGNNNN2014990.6413848583212013No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNNN1956290.6227002538400602No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGNNNNNN1944010.6187914473148743No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGNN1898650.6043530544824286No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNN1676400.5336093858975289No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNN1666800.5305536413827256No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNNN1625740.5174839674475357No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC1535150.4886485616562823No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTNNN1443010.4593197804485763No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGNNNNN1354020.4309936654097901No Hit
AACGATGCCGACCGGCGATGCGGCGGCGNNNNNNN1349020.42940213180833003No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCNNN1348990.42939258260672136No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNNN1286920.40963528447819614No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNN1217270.3874652214098575No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNN1180510.3757642663719231No Hit
ATTGATCATCGACACTTCGAACGCANNNNNNNNNN1174890.373975382603882No Hit
CGACTGCATAATTTGTGGTAGTGGGGNNNNNNNNN1155770.36788935811189877No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNN1129600.3595592712418568No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCNNN1128200.35911364183344796No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNN1064670.33889161589329647No Hit
CGACTGCATAATTTGTGGTAGTGGGGGNNNNNNNN1034630.3293296820157244No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCNNNN989030.31481489557040865No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNN979070.3116445606363002No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGNNNNNNN967220.30787262600083987No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNN909270.28942675155991776No Hit
ATTGATCATCGACACTTCGAACGCACNNNNNNNNN865070.27535759452301084No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAGNNN846500.2694466387271882No Hit
GACTGCATAATTTGTGGTAGTGGGGNNNNNNNNNN811780.25839502939864956No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNN759560.24177305246500064No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNN724250.23053364217148972No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGNNNNN696340.22164970160813965No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCNNNNNN679520.216295782572828No Hit
TCGACTGCATAATTTGTGGTAGTGGGGNNNNNNNN672850.2141726767484803No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNN669830.21321139045319842No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGANN633250.20156773062491662No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGANNN583600.18576380196241823No Hit
CGACTGCATAATTTGTGGTAGTGGGGGANNNNNNN582270.18534045402442983No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNN558670.17782841542553837No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNNN541640.1724076519789654No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNNN537310.171029383880101No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNN522480.16630889521817044No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGNNNNNNN522220.16622613547089454No Hit
GACTGCATAATTTGTGGTAGTGGGGGNNNNNNNNN499620.15903240359229506No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGNNNNNNN496200.15794379460889638No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGNNNN467400.14877656106448645No Hit
CTAAACCATTCGTAGACGACCTGCTTNNNNNNNNN433590.1380146108514135No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGNNNNNNNN428060.13625437468819868No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGNNNN403360.12839219869698598No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN402260.12804206130466478No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNN398690.1269057063132223No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCG397230.12644097850159594No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGANN386060.12288549243593416No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCNNNN381020.12128122656566243No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCNNNNN362480.11537981997144853No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATNNN355630.11319941893744824No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC355280.11308801158534604No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNNN351840.11199303646754152No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGTNN347430.11058930383105374No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAGN342900.10914737438813094No Hit
CGAGGGCGCACCACCGGCCCGTCTCGNNNNNNNNN325760.10369159720232583No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGNNNN316310.10068359869556633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)