FastQCFastQC Report
Sat 16 Sept 2023
SRR15513202_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513202_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19284194
Total Bases679.6 Mbp
Sequences flagged as poor quality0
Sequence length35-51
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN8896524.6133740409373605No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN7356443.814751085785592No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN6929083.5931395421556123No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNN5272612.734161458861075No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGANNN4492172.3294569635630094No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGNNN4326382.2434850012398755No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2960341.5351121234312413No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNN2699111.3996488523191584No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNN2340111.2134860290245992No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAANN2093251.0854744564382623No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGANN1653860.8576246432700272No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNN1603170.8313388674683526No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNN1563840.8109439264093693No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGNN1437930.745652112813219No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNN1380390.7158142051464531No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNNN1311510.6800958339249232No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNNN1216990.6310815997806286No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTNNN1210230.6275761382612102No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNN1190680.6174383020623003No Hit
TCGCTTCTGGCGCCAAGCGCCCGGNNNNNNNNNNN1190060.6171167952365548No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNNN1166660.6049825053616449No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTNNN1143020.5927237612316076No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNN1094190.5674025059071693No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN997180.5170970588659293No Hit
CGCTTCTGGCGCCAAGCGCCCGGNNNNNNNNNNNN931320.48294473702141766No Hit
GAGAGAGACGGGGAGGGCGGCGCCGCCGCNNNNNN927670.4810519952246902No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGNNNN908580.4711526963481077No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNN880330.4565033934008339No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAN857770.4448046934188693No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNN849720.4406302902781418No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATG783390.4062342455173392No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAGNNN729770.378429090684319No Hit
AGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGNN650050.33708953560620686No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTGN636580.33010454053718813No Hit
AGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTG623710.3234306811059876No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGGNNNN577100.29926062764147676No Hit
AGGATTCAACCCGGCGGCGGGTCCGGCCGTGNNNN572470.2968596976363129No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACANNN529700.27468091225383856No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNN480090.24895518060023664No Hit
CTCCCGGGGCTACGCCTGTCTGAGNNNNNNNNNNN466440.24187684483987248No Hit
GTCCGCCGAGGGCGCACCACCGGCCCGTCTCGNNN437510.22687492150307137No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNN407930.2115359345586339No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNN403570.20927501559048822No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNN399230.20702446781026992No Hit
TTTTCACTGACCCGGTGAGGCGGGGNNNNNNNNNN382280.1982348860419056No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGANNN366640.19012461708277772No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCNNN365840.1897097695656868No Hit
CCGCCACGCAGTTTTATCCGGTAAAGCNNNNNNNN353860.18349742799724997No Hit
GAGAGAGAGACGGGGAGGGCGGCGCCGCCGCNNNN352480.1827818160302681No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTG335680.17407001817135836No Hit
TTCACTGACCCGGTGAGGCGGGGNNNNNNNNNNNN323140.16756728334095788No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCNNNN321250.16658720608183053No Hit
ATCGTATAGTGGTTAGTACTCTGCNNNNNNNNNNN313880.16276542333063027No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAGN304750.15803097604182992No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCNNNNNNNNNN297220.15412622378721144No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGTNN295810.15339505503833864No Hit
TCGACTGCATAATTTGTGGTAGTGGGGNNNNNNNN290330.1505533495462657No Hit
TTTCACTGACCCGGTGAGGCGGGGNNNNNNNNNNN289440.15009183168350204No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCNNN286250.14843762720910192No Hit
GCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGN257080.13331124961717353No Hit
CTGCGGTCCGGGTTCCTCCCTCGGGGGGCTCCCTCGC249060.12915240325833685No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGANN247860.12853013198270044No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNN246220.127679694572664No Hit
CGCTTCTGGCGCCAAGCGCCCGGCNNNNNNNNNNN243520.1262795842024821No Hit
AGTCCGCCCGGAGGATTCAACCCGNNNNNNNNNNN235890.12232297600822725No Hit
ACTTCGAACGCACTTGCGGCCCCGGGTNNNNNNNN235700.12222444972291815No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCNNNNNN231410.119999829912518No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG230050.11929458913346339No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNN226120.11725665070575414No Hit
GCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATG219410.11377711715615389No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNNN215990.11200364402059013No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGNNNNNN215000.11149027021819008No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGNN213220.11056723449266274No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGNNNN212480.11018350053935363No Hit
GCACTCGCCGAATCCCGGGGCCGAGGGAGCGAGNN203890.10572907532458967No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGNNNNN202770.10514828880066233No Hit
GAGAGAGACGGGGAGGGCGGCGCCGCCGCCNNNNN202500.10500827776364415No Hit
CGCCACGCAGTTTTATCCGGTAAAGCGNNNNNNNN198820.10309997918502582No Hit
AGAGAGAGACGGGGAGGGCGGCGCCGCCGCNNNNN193580.10038272794808016No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNN193390.10028420166277108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)