FastQCFastQC Report
Sat 16 Sept 2023
SRR15513207_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513207_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39734438
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAACCTGCATTAAAAATTTCGGTTGGGNNNNNNNN13747713.459897935387937No Hit
CGACTGCATAATTTGTGGTAGTGGGGNNNNNNNNN8929512.247297419935825No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNN8794252.213256420035436No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGNNN8602332.164955749468509No Hit
TCGACTGCATAATTTGTGGTAGTGGGGNNNNNNNN7074431.780427849514318No Hit
GACCTGGTATTGCAGTACCTCCAGGNNNNNNNNNN6939831.7465529523784884No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN5749321.446936282325171No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNN5139541.2934724281239363No Hit
CGACTGCATAATTTGTGGTAGTGGGGGNNNNNNNN3538040.8904215532128579No Hit
AACGATGCCGACCGGCGATGCGGCGGCGNNNNNNN3099440.7800387160377102No Hit
GACTGCATAATTTGTGGTAGTGGGGNNNNNNNNNN2794630.7033269226055242No Hit
AACCTGCATTAAAAATTTCGGTTGGGNNNNNNNNN2722530.6851814539317255No Hit
CTCTAGCATCACCAGTATTAGAGGNNNNNNNNNNN2551520.642143220951055No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGGNNNN2346440.5905305619271625No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGNNNNNNN2221900.5591874735965814No Hit
CGACTGCATAATTTGTGGTAGTGGGGGANNNNNNN1955250.49207944000617293No Hit
CCGCGGCCCGGGTTCGATTCCCGGTCAGGGNNNNN1933580.48662573256981767No Hit
AGATACCATGATCACGAAGGTGGTNNNNNNNNNNN1912620.481350711440791No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGNNNN1776270.44703539030802447No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN1725690.43430587844227214No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNN1614700.4063729302022593No Hit
ATCGTATAGTGGTTAGTACTCTGCNNNNNNNNNNN1558050.39211577624427457No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGNNNNNN1552810.3907970209620179No Hit
GAGAGAGACGGGGAGGGCGGCGCCGCCGCNNNNNN1530150.385094159378824No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGNNNN1505900.37899114113555604No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNN1423250.35819054493736646No Hit
AGTTCAACTTTAAATTTGCCCACAGAACNNNNNNN1357570.3416608031551875No Hit
GACTGCATAATTTGTGGTAGTGGGGGNNNNNNNNN1346440.338859706534669No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGANNNNNN1279040.32189709088121493No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGNN1252810.3152957643442698No Hit
ATGCTCATAAGGAAAGGTTAAAAANNNNNNNNNNN1234240.3106222365596312No Hit
TCTTGCGACCCGGGTTCGATTCCCGGGCGGCGNNN1209480.3043908661801131No Hit
AACGTCCGTCGTGAAGAGGGAAACNNNNNNNNNNN933760.23500017793129474No Hit
CCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGNNN917510.23091052653116673No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNN915130.23031154989533262No Hit
AAAACCTGCATTAAAAATTTCGGTTGGGNNNNNNN904920.22774199046177523No Hit
ACTGCATAATTTGTGGTAGTGGGGNNNNNNNNNNN885560.22286964270137655No Hit
TTCTTGCGACCCGGGTTCGATTCCCGGGCGGCGNN865750.21788404305605127No Hit
AAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACNNN834620.21004952932768295No Hit
GCCGCGGCCCGGGTTCGATTCCCGGTCAGGGNNNN814410.20496326134020068No Hit
CCGCGGCCCGGGTTCGATTCCCGGTCAGGNNNNNN805840.20280644210948698No Hit
ACCTCTAGCATCACCAGTATTAGAGGNNNNNNNNN790310.19889799372524156No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGNNNNN776180.19534188453854562No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNN756000.1902631666767251No Hit
CCTCTAGCATCACCAGTATTAGAGGCNNNNNNNNN753970.18975227484027835No Hit
CGACTGCATAATTTGTGGTAGTGGGNNNNNNNNNN693800.17460923947131202No Hit
GAGATACCATGATCACGAAGGTGGTNNNNNNNNNN688690.17332320140025637No Hit
CCAGGCGGCCCGGGTTCGACTCCCGGTGTGGNNNN687210.17295072853427548No Hit
GACTGCATAATTTGTGGTAGTGGGGGANNNNNNNN676280.17019996608483554No Hit
TTCTCTTCAGATCGTATAAATCTTTCGCNNNNNNN665520.1674919876808123No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCNNN663260.16692321154762527No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGNNNN653150.16437881919960715No Hit
TCCCCTTGTAAATTTAACTGTTAGTCCANNNNNNN643340.16190992810820679No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAANNNNNNN639360.16090827810374467No Hit
ACCTCTAGCATCACCAGTATTAGAGGCNNNNNNNN604730.15219291638150262No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN603300.15183302705829135No Hit
AGACCCGGCGGCGTCCGCCCTCCTCTTGCCGCNNN582950.1467115251510541No Hit
CCTCTAGCATCACCAGTATTAGAGGNNNNNNNNNN576800.14516374939039028No Hit
ACTGCATAATTTGTGGTAGTGGGGGNNNNNNNNNN565460.1423098018902394No Hit
TCTCTTCAGATCGTATAAATCTTTCGCNNNNNNNN553620.13933001896239228No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCNNNNN552880.13914378252940182No Hit
CCAGGTGGCCCGGGTTCGACTCCCGGTATGGGNNN551540.1388065435831759No Hit
AAGGCGCTTGAGAGAACTCGGGTGAAGGAACNNNN548220.1379709963432728No Hit
AGGGGAGCCGAAGGGAAACCGAGTNNNNNNNNNNN540020.13590729532905435No Hit
AGTTCAACTTTAAATTTGCCCACAGAANNNNNNNN537820.13535361944719088No Hit
CTCTAGCATCACCAGTATTAGAGGCNNNNNNNNNN529960.13337548652380588No Hit
TTTCTCTTCAGATCGTATAAATCTTTCGCNNNNNN529950.13337296981525193No Hit
GACCTGGTATTGCAGTACTTCCAGGNNNNNNNNNN488790.12301419740729691No Hit
GAGAGAGAGACGGGGAGGGCGGCGCCGCCGCNNNN488130.12284809464273787No Hit
TTACTAAAGATTTCCGTGGAGAGGNNNNNNNNNNN474800.11949332214035593No Hit
TTCTCTTCAGATCGCATAAATCTTTCGCNNNNNNN468690.1179556132139078No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN463360.11661420755466581No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNNN455980.1147568766418692No Hit
CGCGGCCCGGGTTCGATTCCCGGTCAGGGNNNNNN451890.1137275428433139No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNNN441920.11121838441505075No Hit
GAAGGTGTGCTGTGAGGCATGCTGGAGGTNNNNNN433800.10917481706926369No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNN432120.1087520100322043No Hit
TCTCTTCAGATCGCATAAATCTTTCGCNNNNNNNN431560.10861107435318453No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGNNN431170.10851292271958145No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCNNNNNN410850.10339897093800596No Hit
ACTGCATAATTTGTGGTAGTGGGGGANNNNNNNNN410370.10327816892741756No Hit
AGGCATGCTCATAAGGAAAGGTTAAAAANNNNNNN401040.10093007984660561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)