FastQCFastQC Report
Sat 16 Sept 2023
SRR15513220_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513220_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61524059
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN915602514.88202363241346No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNN15809072.5695752616061953No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATNNNN15452202.5115703110550625No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTNNN5397750.8773397086820947No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATNNN4518860.734486650173715No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN4307700.7001651175193105No Hit
GAATACAAGCTTGGGCTGCAGGTCGACCCGNNNNN3977620.6465145610760175No Hit
GGGAGAGCGACGCTCAGACAGGCGTAGCCCCNNNN3767730.6123994517331829No Hit
GAATACAAGCTTGGGCTGCAGGTCGACNNNNNNNN2849020.4630741284478646No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN1802790.2930219542244441No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNN1791770.29123078501696387No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNNN1735060.2820132527341865No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNNN1331850.21647628938136218No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN1325850.215501061137725No Hit
GAATACAAGCTTGGGCTGCAGGTCGACCNNNNNNN1254680.20393322878778203No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTNNNNN1240480.20162518861117407No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNNN1210860.19681081184841853No Hit
TGAACCCCATTCGTGATGGGGATCGGGGATNNNNN1185330.19266121567174235No Hit
GAATACAAGCTTGGGCTGCAGGTCGACCCNNNNNN1016340.16519391218970128No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGANNNNN868270.14112690451714183No Hit
GGGAGAGATCCTTCCGCAGGTTCACCTACGNNNNN784900.12757610807180325No Hit
GGGAGAGCGACGCTCAGACAGGCGTAGCCCNNNNN784640.12753384818124563No Hit
AACCTGCATTAAAAATTTCGGTTGGGNNNNNNNNN781820.12707549090673617No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTNNNNN779920.1267666686295844No Hit
GGGAGAGATCCTTCCGCAGGTTCACCTACNNNNNN742550.12069262205213085No Hit
GCCTGGGAATACCGGGTGCTGTAGGCTTNNNNNNN730630.118755168608105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)