FastQCFastQC Report
Sat 16 Sept 2023
SRR15513226_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15513226_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57196605
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1277379322.333131485688703No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTNN12160612.126106960369414No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNNN11856112.0728695348264115No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNN7349561.2849643785675742No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGNNNNNN7145041.2492070115000706No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNN5705570.9975364796564412No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNN5342710.9340956513065766No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCNNNN4607980.8056387262845408No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGNNNNNN3705580.6478671242812402No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNNN3550910.6208253094742249No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNN3412630.596649049362283No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGNNN2985180.5219155927174349No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNN2827360.49432304592204374No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATTNNN2721890.4758831402668043No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGNNNNNNNN2198540.3843829541980682No Hit
CACTCGCCGAATCCCGGGGCCGAGGGANNNNNNNN1862210.3255805130391917No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATNNN1472750.2574890590097087No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCNNNNNNN1377290.24079925722864148No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCNNNNNN1115000.19494164032987624No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGGNNNN1076720.18824893540447024No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGANNNN961240.1680589258750585No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGNNNN939600.1642754845326921No Hit
AAGCTTGGGCTGCAGGTCGACCCGTGCNNNNNNNN800170.13989816353610499No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCGNNNNNN799800.1398334743819148No Hit
GCGCCGCGACCGGCTCCGGGACGGCTGGGANNNNN778110.13604129126195513No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGCNNNNNN694830.12148098650260797No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTN668560.11688805655510498No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTNNNN664220.11612927026000931No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATNNNN652200.1140277469265877No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGNNNNNN640600.11199965452494952No Hit
CGCCACGCAGTTTTATCCGGTAAAGCNNNNNNNNN614120.10737000911155478No Hit
ACTCGCCGAATCCCGGGGCCGAGGGAGCNNNNNNN613060.1071846834265775No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGGNNN597750.10450795112751884No Hit
ACGGAAGACCCGCTCCCCGGCGCNNNNNNNNNNNN596280.10425094286627677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)