FastQCFastQC Report
Fri 29 Sept 2023
SRR15844694.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15844694.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11676599
Total Bases345.9 Mbp
Sequences flagged as poor quality0
Sequence length17-64
%GC68

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGGCGCACCACCGGCCCGTCTCGC7595806.505147603338951No Hit
GAGGGCGCACCACCGGCCCGTCTCG3053192.6147939138785192No Hit
AGGGCGCACCACCGGCCCGTCTCGC2120021.815614289743101No Hit
CGCCGCGACCGGCTCCGGGACGGCCGG2098911.7975353953664077No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1626141.3926486642214913No Hit
TTTCGCCGAATCCCGGGGCCGAGGAA1292471.1068890864540266No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1274431.0914393823064406No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA1174001.0054297488506714No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG1120880.9599370501633224No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGG1115480.9553124158841115No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCA1105020.9463543280025289No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG1091300.9346043312783113No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCC1039290.890062251859467No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG924900.7920970823781822No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCC918700.7867873170946437No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG886480.7591936658953519No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT856070.7331501235933511No Hit
AGGGCGCACCACCGGCCCGTCTCG828180.7092647439549821No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG801020.686004546358062No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCA788540.6753165026905523No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG598510.5125721967500982No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC545690.46733642218937205No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG505490.432908589221913No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC504150.43176099478966434No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG500880.4289605218094755No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT497560.42611722814151615No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG454630.38935138562178934No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG450090.38546326717223056No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGG447180.3829711031439891No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC438330.37539184140861565No Hit
TTTCGCCGAATCCCGGGGCCGAGGA403030.34516043584266276No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG389290.3333933108433372No Hit
GGCGCACCACCGGCCCGTCTCGC378240.32392993884606297No Hit
CTTTCGCCGAATCCCGGGGCCGAGGA368640.31570836679413244No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG359450.30783792438191976No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC334100.2861278356822907No Hit
CAGAAAAGGCTGGTGAATATTCTGTGA325820.2790367297875006No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG321870.2756538954536334No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG313470.2684600199081942No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGG313100.26814314681869267No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG306170.2622081994937053No Hit
CGAGGGCGCACCACCGGCCCGTCTCG299200.25623899561850155No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT286590.24543961816278864No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCG262580.22487712389540823No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC256770.21990135997647944No Hit
ACAGAAAAGGCTGGTGAATATTCTGTGA242650.2078087977500983No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGG232230.19888496641873202No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTC230750.19761747406072608No Hit
TTCGCCGAATCCCGGGGCCGAGGAAG227660.19497115555651093No Hit
GAGGGCGCACCACCTGCCCGTCTCGC227470.19480843694298314No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG226920.19433740937750796No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC218600.18721204693250149No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC218360.18700650763120324No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG210450.18023227482591464No Hit
GTTGCTGACAAAACAGAAAAGGCTGGTG207690.1778685728609846No Hit
ATCACAAGAAAGACGTGGTCCTGACAGA205330.17584743639821834No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCC204710.17531645986986452No Hit
CCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG201620.17267014136564937No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG200510.1717195220971449No Hit
GCCGCGACCGGCTCCGGGACGGCCGG200160.1714197772827516No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGT197370.1690303829051593No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCA196520.16830243121306127No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCG193860.1660243706236722No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG190250.16293271696664413No Hit
GTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG187810.16084306740344514No Hit
GCGCACCACCGGCCCGTCTCGC187380.16047480948861909No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA182960.15668946068970938No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAG177950.15239882777510816No Hit
ATGTACACTAGGGATAACAGGGTAATCAACGCGA177770.15224467329913444No Hit
CGCGACCGGCTCCGGGACGGCCGG175850.15060035888874834No Hit
GGGCGCACCACCGGCCCGTCTCGC173930.14895604447836222No Hit
CGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG172170.14744875626884163No Hit
TTCGCCGAATCCCGGGGCCGAGGAA169700.14533341429298036No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA163780.14026344486095652No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAA156970.1344312671866183No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG155810.13343782723034334No Hit
GAGGGCTCACCACCGGCCCGTCTCGC151450.12970386325675826No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAG150420.12882175708868654No Hit
GGCGCACCACCGGCCCGTCTCG150040.12849631986163096No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGC145990.12502784415222276No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC145860.12491651036401952No Hit
GTACACTAGGGATAACAGGGTAATCAACGC145560.1246595862373967No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT144720.12394019868285278No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC143800.1231522980278761No Hit
CCGCGACCGGCTCCGGGACGGCCGG141760.12140521396684086No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC139790.11971807886868428No Hit
GTCGCGGCGTGGGAAATGTGGCGTA137020.11734581276620017No Hit
GTGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGC136270.11670350244964307No Hit
CGCGACCGGCTCCGGGACGGCCGGG136000.11647227073568255No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA126480.10831921178418476No Hit
CGCGGCGTGGGAAATGTGGCGTA125210.10723156631481479No Hit
ACACTAGGGATAACAGGGTAATCAACG121890.10438827264685546No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGG121810.10431975954642272No Hit
CGCTGCCTCCAGGCCCGAGAATGAAGAA121240.10383160370583935No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCGG118360.10136513209026017No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGC116830.10005481904448377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)