FastQCFastQC Report
Fri 29 Sept 2023
SRR15844695.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15844695.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16892259
Total Bases499.9 Mbp
Sequences flagged as poor quality0
Sequence length17-64
%GC66

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGGCGCACCACCGGCCCGTCTCGC9307595.509973532847205No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA5142973.0445720729240535No Hit
GAGGGCGCACCACCGGCCCGTCTCG3136391.8567025286552852No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA2832361.6767206801648022No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC2554741.5123732118954605No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2262941.3396313660594477No Hit
AGGGCGCACCACCGGCCCGTCTCGC2035931.2052443666652282No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1242390.7354788959842494No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1237850.7327912743937919No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG1074600.6361493746928697No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1045560.6189580683080931No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCA1006330.5957344130231487No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG980000.5801473917727641No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC881350.5217478609580873No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC833390.4933561579892896No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC823560.4875369244575281No Hit
GGCCCGAGGTGGGATCCCG801540.47450136775667484No Hit
GCCCGAGGTGGGATCCCGAGGC773840.4581033241320773No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGG687890.407222029925068No Hit
CGAGGGCGCACCACCGGCCCGTCTCG663630.3928604220430198No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC650640.38517050916635837No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT624280.36956572830193996No Hit
AGGGCGCACCACCGGCCCGTCTCG593230.35118452777689474No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC582300.344714108397225No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCC570080.33748002561409934No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCA564420.3341293784330444No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG559420.33116944276073434No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG546470.3235032093694514No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC546370.32344401065600525No Hit
CGCCGCGACCGGCTCCGGGACGGCCGG544660.3224317126560752No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC531610.31470628055134603No Hit
GGCCCGAGGTGGGATCCCGAGGC530880.31427412994318876No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC515190.3049858518034799No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG496150.2937144167633234No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG463560.27442155605120666No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG460640.2726929536185776No Hit
GGCGCACCACCGGCCCGTCTCGC455730.2697862967883692No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG451230.26712235468329015No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG448400.2654470310927627No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA442180.261764871116409No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG423330.25060591363180024No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCG422860.2503276796786031No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC419560.24837412213487847No Hit
GCCGAGCGCACGGGGTCGGCGGCGA405420.24000342405358574No Hit
ATCACAAGAAAGACGTGGTCCTGACAGA399630.23657581854505072No Hit
GCCCGAGGTGGGATCCCGAGGCC384340.22752433525912666No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCC383720.22715730323576025No Hit
CGCACGGGGTCGGCGGCGAT368160.21794598342353144No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT340970.20184985323750954No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC330500.19565174793969237No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG330200.19547415179935376No Hit
AGCCGAGCGCACGGGGTCGGCGGCGAT327190.19369227052462315No Hit
AGCCGAGCGCACGGGGTCGGCGGCGA320900.18996867144885715No Hit
GCCGAGCGCACGGGGTCGGCGGCGAT317350.18786711712151702No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG316900.18760072291100913No Hit
GAGGGCGCACCACCTGCCCGTCTCGC305580.18089942854889923No Hit
ACAGAAAAGGCTGGTGAATATTCTGTGA304570.18030152154309262No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA300240.17773821725087213No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC294930.1745947655668789No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG292820.17334567271316406No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGAT290750.17212025934482772No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA288840.17098956391800527No Hit
AGATAACCTCGGGCCGATCGCA275190.1629089395325989No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC272940.16157696848005942No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC262950.155663017006784No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCA262090.15515390807114668No Hit
GAGGGCTCACCACCGGCCCGTCTCGC261360.1547217574629894No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCA260410.1541593696852505No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG260370.15413569019987203No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGT249930.14795534451608872No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGA246390.1458597100600932No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGG236290.13988064000202696No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC233170.13803364014250552No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC230990.13674310818937832No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG229150.13565385186196827No Hit
CAGAAAAGGCTGGTGAATATTCTGTGA227250.13452907630649044No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCG226020.1338009321311022No Hit
GTTGCTGACAAAACAGAAAAGGCTGGTG220120.13030820803777635No Hit
GGGCGCACCACCGGCCCGTCTCGC215840.12777450310227897No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT206660.12234006120791778No Hit
GTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG205070.12139880166412319No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT204980.12134552282202161No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG201770.11944524412039859No Hit
GCGCACCACCGGCCCGTCTCGC198400.11745024747726163No Hit
CGCACGGGGTCGGCGGCGA193080.11430087592192377No Hit
GCCCGAGGTGGGATCCCG191330.11326489843661526No Hit
TTTCGCCGAATCCCGGGGCCGAGGAA191320.11325897856527063No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG189970.11245979593374693No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT189550.1122111613372729No Hit
CGAGCGCACGGGGTCGGCGGCGAT185800.10999120958304037No Hit
CCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG182060.10777717770015247No Hit
GGCCCGAGGTGGGATCCCGAGGCC181150.10723846940779205No Hit
GTGACTCTAGATAACCTCGGGCCGATCGCA181120.1072207097937582No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG174840.10350303058933681No Hit
GCCCGAGGTGGGATCCCGAGGCCT174620.10337279341975517No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGG170860.10114692179417804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)