FastQCFastQC Report
Fri 29 Sept 2023
SRR15844696.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15844696.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13204734
Total Bases379.5 Mbp
Sequences flagged as poor quality0
Sequence length17-64
%GC70

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGGCGCACCACCGGCCCGTCTCGC9071696.870028582173636No Hit
GAGGGCGCACCACCGGCCCGTCTCG3927072.973986450616877No Hit
AGGGCGCACCACCGGCCCGTCTCGC2766722.0952485676727757No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC2106361.595155192069753No Hit
CGCCGCGACCGGCTCCGGGACGGCCGG1944151.472312884152002No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1568051.1874907892881446No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGG1566571.186369979130212No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1331761.0085473891408945No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG1284640.9728632170856301No Hit
AGGGCGCACCACCGGCCCGTCTCG1156780.8760343070901693No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA1096300.8302325514470795No Hit
TTTCGCCGAATCCCGGGGCCGAGGAA1087890.8238636234550426No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG1041780.7889443286021514No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1036520.7849609087165255No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG945140.7157584545057856No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCC903380.6841334327522235No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCA895000.6777872238850098No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG806880.611053581238365No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG784950.5944459009927804No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCC772560.5850629024408973No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCA649880.49215682799820126No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC619830.46939983796720175No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG566990.4293838861123594No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT540460.40929260672725404No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGG507150.3840668051321594No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG496200.37577432457177856No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG486010.36805739517357944No Hit
GGCGCACCACCGGCCCGTCTCGC463580.3510710628476121No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC461670.3496246119005502No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC457310.3463227657596132No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG440610.3336757862748314No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG425940.3225661342364034No Hit
CGAGGGCGCACCACCGGCCCGTCTCG412040.3120396064017647No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG410550.3109112232022243No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC396200.30004390849524115No Hit
GCCCGAGGTGGGATCCCGAGGC393680.29813550201011246No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGG385690.2920846417655971No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG370420.2805206072307098No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC360600.2730838803719938No Hit
TTTCGCCGAATCCCGGGGCCGAGGA348780.2641325451917471No Hit
CTTTCGCCGAATCCCGGGGCCGAGGA336650.2549464457216632No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC336540.25486314226397894No Hit
GGCCCGAGGTGGGATCCCG328700.24892587764357843No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCG321710.24363232155982847No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC319620.24204955586382884No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGG318850.2414664316600395No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG317870.24072427358248943No Hit
GTCGCGGCGTGGGAAATGTGGCGTA293630.22236722072553677No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT285110.21591498927581576No Hit
GAGGGCGCACCACCTGCCCGTCTCGC269140.20382084182839275No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG267700.2027303238368906No Hit
CGCGGCGTGGGAAATGTGGCGTA262400.19871661178483413No Hit
CAGAAAAGGCTGGTGAATATTCTGTGA246110.18638012700596618No Hit
GCGCACCACCGGCCCGTCTCGC231160.17505842980252384No Hit
GGGCGCACCACCGGCCCGTCTCGC227070.1719610557849935No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC206170.15613339882499716No Hit
TTCGCCGAATCCCGGGGCCGAGGAAG204160.15461121746185874No Hit
TCCGGTGCGGAGAGCCGT203640.15421741929826077No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC198250.15013554987173539No Hit
GGCGCACCACCGGCCCGTCTCG198230.1501204037885201No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGT197920.14988563949868283No Hit
GAGGGCTCACCACCGGCCCGTCTCGC195020.14768945743246326No Hit
GCCGCGACCGGCTCCGGGACGGCCGG194620.14738653576815708No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCG193150.146273298651832No Hit
GCCGAGCGCACGGGGTCGGCGGCGA191660.14514491545229158No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG190490.1442588695841961No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA189160.14325165505037815No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAG185480.14046477573876157No Hit
CCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG184480.13970747157799618No Hit
ACAGAAAAGGCTGGTGAATATTCTGTGA182980.13857151533684814No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC182300.1380565485075277No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAA178670.13530753440394938No Hit
GTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG178450.13514092748858098No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG175870.13318708275380634No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTC174580.132210160386419No Hit
GGCCCGAGGTGGGATCCCGAGGC174210.1319299578469358No Hit
GCCCGAGGTGGGATCCCGAGGCC173280.131225664977424No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG172340.13051379906630456No Hit
CGCGGCGTGGGAAATGTGGCGTAC170570.12917337070174983No Hit
GTCGCGGCGTGGGAAATGTGGCGTAC169150.128097998793463No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG167560.12689388517784608No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG165160.12507635519200916No Hit
CGCGACCGGCTCCGGGACGGCCGGG164230.12437206232249737No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA164050.1242357475735596No Hit
GTCCGGTGCGGAGAGCCGT163390.12373592682745446No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC162470.12303920699955032No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA162010.12269084708559823No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGT161460.12227432979717728No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA153820.11648852600892982No Hit
CGCACGGGGTCGGCGGCGA153520.1162613347607002No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCC153170.11599627830443235No Hit
CGCGACCGGCTCCGGGACGGCCGG150300.11382281536303572No Hit
TTCGCCGAATCCCGGGGCCGAGGAA150100.11367135453088265No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAG148380.11236879137436619No Hit
GTTGCTGACAAAACAGAAAAGGCTGGTG146640.11105108213463444No Hit
GAGGGCGCACCACCGGCCCGTCT146500.11094505955212729No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT145530.11021047451618488No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC144700.10958191206274961No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGG142110.1076204942863673No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCA140510.1064088076291427No Hit
CGCACGGGGTCGGCGGCGAT139780.10585597559178397No Hit
CGTCGCGGCGTGGGAAATGTGGCGTA137700.104280782937392No Hit
GCCGCGACCGGCTCCGGGACGGCCGGG135130.10233451124422499No Hit
TGGGGAAGGTGGCTCGGGGG132410.10027464392694317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)