FastQCFastQC Report
Fri 29 Sept 2023
SRR15844697.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15844697.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16579228
Total Bases475.8 Mbp
Sequences flagged as poor quality0
Sequence length17-64
%GC67

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGGCGCACCACCGGCCCGTCTCGC8831505.326846340493056No Hit
GAGGGCGCACCACCGGCCCGTCTCG3240091.9543069194777947No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC2517621.5185387401632935No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2290821.3817410557355265No Hit
AGGGCGCACCACCGGCCCGTCTCGC2086641.2585869498869309No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1417730.8551242554840309No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1346390.8120945076574132No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCA1303630.7863031981947531No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1244400.7505777711724575No Hit
GGCCCGAGGTGGGATCCCG1194070.7202205072516042No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA1021060.6158670355459253No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG972850.5867884801391234No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGG931150.561636524933489No Hit
CGCCGCGACCGGCTCCGGGACGGCCGG843390.508702817766907No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCC839240.5061996855342118No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG799970.4825134198045892No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT793360.4785265031640798No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG733270.4422823547634426No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCA730840.44081666528743074No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC695780.4196697216541084No Hit
AGGGCGCACCACCGGCCCGTCTCG689470.4158637543316251No Hit
GCCCGAGGTGGGATCCCGAGGC637840.38472237669932524No Hit
CGAGGGCGCACCACCGGCCCGTCTCG634560.382743997488906No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC599880.3618262563250834No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA569120.34327291958346917No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCC553780.3340203777883988No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG553350.333761017099228No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG525120.3167336862729676No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG515180.3107382322023679No Hit
ACAGAAAAGGCTGGTGAATATTCTGTGA497130.2998511149011281No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG493250.2975108370546566No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG460470.2777391082383329No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG458970.2768343616482022No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC453680.2736436220070078No Hit
GGCGCACCACCGGCCCGTCTCGC453010.2732395018634161No Hit
CAGAAAAGGCTGGTGAATATTCTGTGA432340.2607720938514146No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCG430640.2597467143825997No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG415100.25037353970884535No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC412540.24882943886168885No Hit
ATCACAAGAAAGACGTGGTCCTGACAGA410060.24733359116600606No Hit
TTTCGCCGAATCCCGGGGCCGAGGAA410040.24732152787813763No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT401350.24208002929931358No Hit
GGCCCGAGGTGGGATCCCGAGGC398740.2405057702324861No Hit
CGCACGGGGTCGGCGGCGAT388800.23451031616188645No Hit
GCCGAGCGCACGGGGTCGGCGGCGA370730.22361113557277817No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC367690.22177751581677987No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT364860.2200705605833999No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG359530.2168556943664687No Hit
CGCACGGGGTCGGCGGCGA354640.21390622048264252No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG352520.21262751196859103No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG342630.20666221611766242No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG337320.20345941318859964No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC332470.20053406588051026No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC330040.19906837640449845No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA321880.19414655495418726No Hit
GTTGCTGACAAAACAGAAAAGGCTGGTG319000.19240944150113623No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC318040.19183040368345255No Hit
GCCCGAGGTGGGATCCCGAGGCC299110.1804125017160027No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGG297560.17947759690620094No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC286510.17281263035890454No Hit
GAGGGCGCACCACCTGCCCGTCTCGC275640.1662562334024238No Hit
GCCCGAGGTGGGATCCCG271450.16372897459399197No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC262650.15842112793189164No Hit
GCCGAGCGCACGGGGTCGGCGGCGAT253350.1528116990730811No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC244480.14746163090344136No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGT233460.14081475928794757No Hit
AGCCGAGCGCACGGGGTCGGCGGCGA233400.1407785694243423No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT230880.13925859515292266No Hit
GAGGGCTCACCACCGGCCCGTCTCGC227960.13749735512413486No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC227120.13699069703366162No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGG226170.13641769085991218No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA223920.13506057097471608No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGT222200.13402312821803283No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC220510.13300378039315222No Hit
CCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG220470.13297965381741536No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCG218750.13194221106073215No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT218530.13180951489417964No Hit
GGGCGCACCACCGGCCCGTCTCGC217940.13145364790206154No Hit
GTCGCGGCGTGGGAAATGTGGCGTA214040.12910130676772164No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC211640.12765371222351246No Hit
GCGCACCACCGGCCCGTCTCGC208100.1255185102708039No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT200340.12083795457786092No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC200250.12078366978245307No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG195520.11793070220157416No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCA194810.11750245548224562No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC193360.1166278671117859No Hit
GTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG191050.11523455736298457No Hit
AGCCGAGCGCACGGGGTCGGCGGCGAT190340.11480631064365603No Hit
CGCGGCGTGGGAAATGTGGCGTA189300.11417901967449873No Hit
GTCGCGGCGTGGGAAATGTGGCGTAC181570.10951655891335832No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA181430.10943211589827948No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGG178390.10759849614228117No Hit
TTCGCCGAATCCCGGGGCCGAGGAAGCCAG177600.10712199627147898No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCG170650.1029300037372066No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAG170470.1028214341463909No Hit
GGCGCACCACCGGCCCGTCTCG165800.10000465642911721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)