FastQCFastQC Report
Fri 29 Sept 2023
SRR15844698.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15844698.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14800618
Total Bases429.9 Mbp
Sequences flagged as poor quality0
Sequence length17-64
%GC68

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGGCGCACCACCGGCCCGTCTCGC8883006.00177641230927No Hit
GAGGGCGCACCACCGGCCCGTCTCG3279232.21560342953247No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC2324781.5707317086354096No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2095031.4155017040504658No Hit
AGGGCGCACCACCGGCCCGTCTCGC2055901.3890636188299705No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCA1450870.9802766343945908No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1271980.8594100597691258No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1240450.83810689526613No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1204630.8139052031475982No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1042490.7043557235245177No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCC932520.6300547720372217No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG909110.6142378649323967No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGG903910.6107244981256863No Hit
CGCCGCGACCGGCTCCGGGACGGCCGG901250.6089272758745614No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCA867480.5861106610548289No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA826840.5586523481654617No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG809740.5470987765510873No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT793440.5360857229069759No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG749060.5061004885066286No Hit
AGGGCGCACCACCGGCCCGTCTCG689220.46566974433094616No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCC655710.44302879785154914No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG632150.42711054362729983No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC631300.4265362432838953No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG594950.40197645801006415No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA592710.40046300769332743No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC586120.3960104909132849No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG576240.3893350939805351No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG575310.38870674184010423No Hit
CGAGGGCGCACCACCGGCCCGTCTCG553460.3739438447772924No Hit
GGCCCGAGGTGGGATCCCG534400.3610660041357733No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG530480.3584174660814839No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG520950.3519785457607243No Hit
TTTCGCCGAATCCCGGGGCCGAGGAA479900.3242432174115973No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG470060.31759484637736074No Hit
GGCGCACCACCGGCCCGTCTCGC450010.30404811474764093No Hit
GCCCGAGGTGGGATCCCGAGGC435610.29431879128290456No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT415320.2806099042621058No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC407500.2753263411027837No Hit
CGCACGGGGTCGGCGGCGAT404760.2734750670546324No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC372370.25159084573360385No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG361640.24434114845744956No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG355590.2402534813073346No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC355440.24015213418791026No Hit
CGCACGGGGTCGGCGGCGA349140.2358955551720881No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCG338180.22849045897948314No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG304400.20566708768512232No Hit
GGCCCGAGGTGGGATCCCGAGGC302930.20467388591476382No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC301600.20377527478920138No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGG298880.20193751369030674No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA298100.20141050866930016No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC293600.19837009508657005No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGT292820.1978430900655635No Hit
GCCGAGCGCACGGGGTCGGCGGCGA291720.19709987785645167No Hit
GAGGGCGCACCACCTGCCCGTCTCGC285900.19316760962278737No Hit
CCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG282420.19081635645214276No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT280940.18981639820715596No Hit
ATCACAAGAAAGACGTGGTCCTGACAGA272980.18443824440303777No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC256560.17334411306338696No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCA253030.17095907751960088No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG252750.1707698962300088No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC250160.16901996930128188No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCG249560.16861458082358452No Hit
ACAGAAAAGGCTGGTGAATATTCTGTGA240560.16253375365812428No Hit
GTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG240350.1623918676909302No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC236060.15949334007539415No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGG232860.15733126819434162No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG231070.15612185923587787No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC222780.15052074176902613No Hit
CAGAAAAGGCTGGTGAATATTCTGTGA220140.14873703246715778No Hit
GAGGGCTCACCACCGGCCCGTCTCGC216240.146102007362125No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT215590.14566283651128623No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC215400.14553446349334873No Hit
GGGCGCACCACCGGCCCGTCTCGC210260.1420616355344081No Hit
GTTGCTGACAAAACAGAAAAGGCTGGTG208590.1409333042714838No Hit
GCGCACCACCGGCCCGTCTCGC206210.139325263309951No Hit
GCCCGAGGTGGGATCCCGAGGCC205490.13883879713671415No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCGT203550.13752804105882607No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA202300.1366834817302899No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCC201030.1358254094524972No Hit
GCCGAGCGCACGGGGTCGGCGGCGAT199220.13460248754477686No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC198660.13422412496559263No Hit
GTCGCGGCGTGGGAAATGTGGCGTA198220.13392684008194794No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC195780.1322782602726454No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC192280.12991349415274417No Hit
GAGCGCACGGGGTCGGCGGCGA188640.1274541373880469No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAG188360.1272649560984548No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC187240.12650823094008642No Hit
AGCCGAGCGCACGGGGTCGGCGGCGA187070.1263933708714055No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG186220.12581907052800093No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGG182280.12315701952445499No Hit
CGCGGCGTGGGAAATGTGGCGTA178970.12092062642249128No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA177790.12012336241635316No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT176480.11923826424004727No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTT175820.11879233691458019No Hit
GGCGCACCACCGGCCCGTCTCG166480.11248178961175812No Hit
TTCGCCGAATCCCGGGGCCGAGGAAGCCAG166180.11227909537290942No Hit
CTTTCGCCGAATCCCGGGGCCGAGGA165970.11213720940571537No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG165250.11165074323247855No Hit
GAGCGCACGGGGTCGGCGGCGAT164690.11127238065329434No Hit
AGCGCACGGGGTCGGCGGCGA162800.10999540694854769No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTC159050.10746172896293925No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG157440.1063739365477847No Hit
CACGGGGTCGGCGGCGAT155380.10498210277435711No Hit
CGCTGCCTCCAGGCCCGAGAATGAAGAA152880.10329298411728483No Hit
AGCCGAGCGCACGGGGTCGGCGGCGAT152760.10321190642174535No Hit
CGAGCGCACGGGGTCGGCGGCGA150350.10158359603632766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)