FastQCFastQC Report
Fri 29 Sept 2023
SRR15844699.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR15844699.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15580215
Total Bases453.4 Mbp
Sequences flagged as poor quality0
Sequence length17-64
%GC69

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGGCGCACCACCGGCCCGTCTCGC9648196.192591052177393No Hit
GAGGGCGCACCACCGGCCCGTCTCG4181402.6837883816109085No Hit
AGGGCGCACCACCGGCCCGTCTCGC3511682.2539355201452613No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC2174261.3955263133403486No Hit
CGCCGCGACCGGCTCCGGGACGGCCGG2118251.3595768736182396No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGG1695851.0884637984777488No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG1659451.0651008346162105No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1645531.0561664264581714No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1610721.033823987666409No Hit
AGGGCGCACCACCGGCCCGTCTCG1520110.9756668954825078No Hit
TTTCGCCGAATCCCGGGGCCGAGGAA1240940.7964845157785051No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA1202290.7716774126672834No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCA1172700.7526853769347855No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG1090600.6999903403130188No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCC1066800.6847145562497051No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG1033980.663649378394329No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1025660.6583092723688344No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1020390.6549267773262436No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG998690.6409988565626341No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCC937570.6017696161445782No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCA815710.5235550343817463No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC783030.5025797140796837No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGG589390.37829388105363115No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG571390.36674076705616704No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG570630.36625296890960746No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG523710.33613785175621774No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT515810.33106731839066406No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC513510.3295910871576547No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT500940.32152316254942565No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG497920.3195848067565178No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG491460.3154385225107612No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC490350.3147260804809176No Hit
GGCGCACCACCGGCCCGTCTCGC483980.3106375618051484No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC469710.30147850976382545No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG461590.2962667716716361No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG456680.29311533890899455No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGG451390.2897200070730731No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC447490.28721683237362255No Hit
CGAGGGCGCACCACCGGCCCGTCTCG438470.28142743858156005No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG437340.2807021597583859No Hit
TTTCGCCGAATCCCGGGGCCGAGGA437110.28055453663508495No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC431490.27694739770921006No Hit
CTTTCGCCGAATCCCGGGGCCGAGGA397320.2550157363040241No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC382590.24556143801609925No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG379650.24367442939651346No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG377330.24218536137017363No Hit
CAGAAAAGGCTGGTGAATATTCTGTGA376290.24151784811698684No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC343080.22020235279166556No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGG337580.21667223462577376No Hit
GCCCGAGGTGGGATCCCGAGGC335840.21555543360601892No Hit
GAGGGCGCACCACCTGCCCGTCTCGC309250.19848891687309836No Hit
CGTCCCCGCTCGGCGGGGTCCCCGCGTCG280260.17988198494051588No Hit
GTCGCGGCGTGGGAAATGTGGCGTA276030.17716700315111186No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA271050.17397064161181344No Hit
GCGCACCACCGGCCCGTCTCGC268870.17257143113878726No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCG257060.16499130467711776No Hit
CGCGGCGTGGGAAATGTGGCGTA250580.16083218363803067No Hit
CACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG248190.15929818683503405No Hit
GCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCC247120.15861141839185144No Hit
GAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTC245850.15779628201536372No Hit
GGGCGCACCACCGGCCCGTCTCGC245010.15725713669548205No Hit
GTTGCTGACAAAACAGAAAAGGCTGGTG239410.1536628345629377No Hit
GAGGGCTCACCACCGGCCCGTCTCGC238400.15301457649974662No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC234390.15044079943697825No Hit
ACAGAAAAGGCTGGTGAATATTCTGTGA231180.14838049410743048No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA224760.14425988344833496No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAA223560.14348967584850403No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAG216520.1389711245961625No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT208340.13372087612398162No Hit
CGCGACCGGCTCCGGGACGGCCGGG207860.1334127930840492No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCA207100.13292499493748963No Hit
GCCGCGACCGGCTCCGGGACGGCCGG206200.13234733923761643No Hit
GGCGCACCACCGGCCCGTCTCG205720.13203925619768406No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT204630.13133965096117095No Hit
CCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG202350.12987625652149218No Hit
GCCGAGCGCACGGGGTCGGCGGCGA198550.1274372657886942No Hit
CGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCC194810.12503678543588775No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGC193430.12415104669608217No Hit
CGCGACCGGCTCCGGGACGGCCGG191780.12309201124631464No Hit
GGCCCGAGGTGGGATCCCG189790.12181475030992833No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA188090.1207236228768345No Hit
GTCGCGGCGTGGGAAATGTGGCGTAC186270.11955547468375756No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG185110.11881094067058766No Hit
GTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG180580.11590340698122586No Hit
CGCGGCGTGGGAAATGTGGCGTAC177820.11413192950161472No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG173480.11134634534889282No Hit
ATCACAAGAAAGACGTGGTCCTGACAGA173380.11128216138224023No Hit
TTCGCCGAATCCCGGGGCCGAGGAAG171280.10993429808253609No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTT166200.10667375257658511No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT163510.10494720387363077No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGG163030.10463912083369838No Hit
GAATACAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAA161310.10353515660727403No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC160030.10271360183412104No Hit
CGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG156960.10074315405788688No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC156940.10073031726455636No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGG156050.1001590799613484No Hit
GCCGCGACCGGCTCCGGGACGGCCGGG155850.10003071202804326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)