FastQCFastQC Report
Wed 28 Jun 2023
SRR1585488_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585488_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39157230
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length21-42
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATACAAGCTTGGGCTGCAGGTCGACCCG1422160.36319218698564737No Hit
TCTACTTCATAATTTGTGGTAGTGGGTT1261770.3222316798200486No Hit
AAACGATTCCGACCGGCGATGCGGCGTCG1253050.3200047602958636No Hit
CCTCTAGCATCACCAGTATTAGAGGC1130420.2886874275836161No Hit
AACTATTCAGACCGGCGATGCGGCGGCT952390.24322200523377163No Hit
AAACGATTACGACCGGAGATGCGGCGTCG945700.2415135084887261No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT933230.2383289114168699No Hit
TCTACTTCATAATTTGTGGTAGTGGGT669870.17107185569561484No Hit
AAACGATTCCGACCGGAGATGCGGCGTCG507280.12954951103538223No Hit
AATACAAGCTTGGGCTGCAGGTCGAC447820.11436457583950653No Hit
CTCTAGCATCACCAGTATTAGAGGC439650.11227811568898004No Hit
ACCTCTAGCATCACCAGTATTAGAGGC421510.10764551016504487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)