FastQCFastQC Report
Wed 28 Jun 2023
SRR1585489_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585489_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27226362
Total Bases773.8 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGG1456260.5348713133249311No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG1151070.4227777475374786No Hit
GGAGAGCGACGCTCAGACAGGC902260.33139205304035846No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT797400.2928779100197081No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC548930.20161709449099371No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC489390.1797485833766553No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC429950.15791680137067157No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT399170.14661158181912076No Hit
GGGACAAGCATCAAGCACGCAAC333870.1226274740635565No Hit
GGTCGGTTTCTATCTACTTCAAATTCCTC331560.12177903166056486No Hit
CCTCTAGCATCACCAGTATTAGAGGC303150.11134429197701845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)