FastQCFastQC Report
Wed 28 Jun 2023
SRR1585490_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585490_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33602305
Total Bases939.1 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTACTTCATAATTTGTGGTAGTGGGTT1450610.43169955156350137No Hit
GGAGAGCGACGCTCAGACAGGC1304870.3883275269360242No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG1271650.3784413003810304No Hit
GGAGAGCGACGCTCAGACAGG941110.28007304856021037No Hit
ACTATGCCGACCTGCGATGAGGCGGCT673120.2003195911709033No Hit
ACGATTAAAGTCCTACGTGATCTGAGTT625700.1862074640415293No Hit
CCTCTAGCATCACCAGTATTAGAGGC503060.14970996781321994No Hit
CGGGGGAAGGTGGCTCGGGGGGC481120.1431806538271705No Hit
TCTACTTCATAATTTGTGGTAGTGGGT464200.13814528497375403No Hit
CGATTAAAGTCCTACGTGATCTGAGTT456300.13579425578096502No Hit
ACGATTAAAGTCCTACGTGATCTGAGTTC423750.12610742030941033No Hit
CGGGGGAAGGTGGCTCGGGGGG420940.12527116815349423No Hit
CGATTAAAGTCCTACGTGATCTGAGTTC391270.11644141674209553No Hit
AAACGATTCCGACCGGCGATGCGGCGTCG367010.10922167392980928No Hit
AACGATTAAAGTCCTACGTGATCTGAGTT356990.10623973563718322No Hit
ACCTCTAGCATCACCAGTATTAGAGGC350910.10443033595463169No Hit
AATACAAGCTTGGGCTGCAGGTCGAC344730.10259117640888028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)