FastQCFastQC Report
Wed 28 Jun 2023
SRR1585491_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585491_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31709360
Total Bases883.4 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGGC1555200.49045455348200023No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG1088760.3433560311529466No Hit
GGAGAGCGACGCTCAGACAGG1032500.3256136358475857No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG881750.2780724681923571No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT710910.22419563182606017No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT435650.13738845564842683No Hit
CCTCTAGCATCACCAGTATTAGAGGC348800.10999906652168319No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATTT340780.10746984486599541No Hit
GGAGAGCGACGCTCAGACAGGCG318320.10038676277288473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)