FastQCFastQC Report
Wed 28 Jun 2023
SRR1585493_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585493_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22433907
Total Bases652.1 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATACAAGCTTGGGCTGCAGGTCGACCCG2179220.9713956646071503No Hit
TCTACTTCATAATTTGTGGTAGTGGGTT1165080.5193388739643077No Hit
AATACAAGCTTGGGCTGCAGGTCGAC679220.30276491740827843No Hit
TTGGGGGGCCGGGCCACCCCTCCCCCGGCGC471240.21005703553999755No Hit
TTGGGGGGCCGGGCCACCCCTCCCCCGGCG399280.17798058982771034No Hit
AATACAAGCTTGGGCTGCAGGTCGACCC375470.1673671911005069No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG366170.16322168046787391No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC333730.14876142617511967No Hit
TGTGGGGGCCGGGCCACCCCTCCCCCGGCGC325650.14515973521687506No Hit
AATACAAGCTTGGGCTGCAGGTCGACC321790.14343912542741663No Hit
TCTACTTCATAATTTGTGGTAGTGGGT314890.14036342399030183No Hit
CCTCTAGCATCACCAGTATTAGAGGC276520.12325984947695469No Hit
AACTATTCAGACCGGCGATGCGGCGGCT270160.12042485510883147No Hit
ACCTCTAGCATCACCAGTATTAGAGGC259210.1155438506542797No Hit
TGTGGGGGCCGGGCCACCCCTCCCCCGGCG258930.11541903958146925No Hit
ACTATGCCGACCTGCGATGAGGCGGCT251340.11203576800064297No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA250040.11145628801973725No Hit
TGGTGGGGCCGGGCCACCCCTCCCCCGGCGC237710.10596014327776254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)