FastQCFastQC Report
Wed 28 Jun 2023
SRR1585495.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585495.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12356629
Total Bases347.5 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGG1155290.9349556420282586No Hit
GGAGAGCGACGCTCAGACAGGC410830.3324774094941266No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA360030.2913658733300158No Hit
GGAGAGCGACGCTCAGACAGGCGT327120.2647323958662189No Hit
AAACGCTGCCGCCCGGCGATGCGGCGGCG297500.24076145686659362No Hit
GGAGAGATCCTTCCGCAGGTTC238460.1929814353089342No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA222210.17983059942966645No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAA217030.1756385175924599No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC206150.16683352716991018No Hit
TCGACTGCATCCTTTGTGGTAGTGGGGG201860.1633617064977835No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG196790.15925864570345197No Hit
AGCTTGGGCTGCAGGTCGACCCGTGC181920.14722461927116207No Hit
TCGACTGCATACTTTGTGGTCGTGGGGG177710.14381754117567178No Hit
GCTGGTCCGAAGGTAGTGAGTTATCTCAA173600.140491391300977No Hit
TCGACTGCATCATTTGTGGTCGTGGGGG142710.115492663897249No Hit
TGGTCCGATGGTAGTGGGTTATCAGAA130450.10557086402772148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)