FastQCFastQC Report
Wed 28 Jun 2023
SRR1585496.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585496.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18050055
Total Bases521.8 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAAAAGGGACAAGCATCAAGCACGCAAC833170.4615886211981071No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA463890.2570019869745549No Hit
AAACGCTGCCGCCCGGCGATGCGGCGGCG417010.23102976694530847No Hit
AGCTTGGGCTGCAGGTCGACCCGTGC409800.2270353192829606No Hit
GGTACACGGAGTCAAGACCCGCAACGCGG352350.1952071614186217No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA309690.17157288440395335No Hit
CGATCAAAAGGGACAAGCATCAAGCACGCAAC277800.15390534821085033No Hit
TCGACTGCATCCTTTGTGGTAGTGGGGG271970.15067544115516546No Hit
TCGACTGCATACTTTGTGGTCGTGGGGG265980.14735689171030225No Hit
GGTACACGGAGTCAAGACCCGCAACGCGT255680.1416505379069482No Hit
GGTACACGGAGTCGACCCGCAACGCGG228180.12641512726692522No Hit
TGTACACGGAGTCAAGACCCGCAACGCGG209320.11596640564253129No Hit
TCGACTGCATCATTTGTGGTCGTGGGGG209220.11591100414929482No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAA202780.11234314798486765No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT188330.10433763221220102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)