FastQCFastQC Report
Wed 28 Jun 2023
SRR1585498_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585498_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29827680
Total Bases836.2 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATACAAGCTTGGGCTGCAGGTCGACCCG1564150.5243954608605161No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT1551250.5200706189686894No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC1160140.38894744747161025No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT744240.24951320384287348No Hit
GGAGAGCGACGCTCAGACAGG620950.20817911416509766No Hit
GGGACAAGCATCAAGCACGCAAC595210.19954954592512728No Hit
CCTCTAGCATCACCAGTATTAGAGGC521790.17493482563846738No Hit
GGTCGGTTTCTATCTACTTCAAATTCCT445000.1491902823149504No Hit
AATACAAGCTTGGGCTGCAGGTCGAC439220.14725248494016296No Hit
GGAGAGCGACGCTCAGACAGGC436310.1462768810715416No Hit
GGACAAGCATCAAGCACGCAAC403990.13544130820767822No Hit
AGCTTGGGCTGCAGGTCGACCCG366190.122768515687442No Hit
AAAGGGACAAGCATCAAGCACGCAAC361760.12128331804552013No Hit
AAAAGGGACAAGCATCAAGCACGCAAC354810.11895326756891586No Hit
AATACAAGCTTGGGCTGCAGGTCG353080.11837326939272515No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCGTG329030.11031028896649017No Hit
AGGGACAAGCATCAAGCACGCAAC323150.10833896568556456No Hit
CTCTAGCATCACCAGTATTAGAGGC303500.10175112512941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)