FastQCFastQC Report
Wed 28 Jun 2023
SRR1585500.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585500.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9465605
Total Bases266.1 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCTGGGAATACCGGGTGCTGTAGGCTT4226514.465123993659148No Hit
CGCCTGGGAATACCGGGTGCTGTAGGCTT1807191.909217635851063No Hit
GGAATACCGGGTGCTGTAGGCTT1756731.855908840480878No Hit
GGAGACCGCCTGGGAATACCGGGTGCTGTAGGCTT1751621.850510347727377No Hit
GGGAATACCGGGTGCTGTAGGCTT1092371.1540413951353348No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTTT985411.041042807089457No Hit
AATACCGGGTGCTGTAGGCTT930310.9828320535243126No Hit
GAATACCGGGTGCTGTAGGCTT898590.9493212531053218No Hit
AGACCGCCTGGGAATACCGGGTGCTGTAGGCTT887950.9380805558651559No Hit
GAGACCGCCTGGGAATACCGGGTGCTGTAGGCTT769830.8132919131951947No Hit
GCCTGGGAATACCGGGTGCTGTAGGCTT657450.6945673308784805No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT651330.6881018170523701No Hit
GAGACCGGGGTTCGATTCCCCGACGGGGAGCCA562170.5939081548406046No Hit
GAGACCGGGGTTCGATTCCCCGACGGGGAGC534400.5645703576263746No Hit
CCGCCTGGGACTACCGGGTGCTGTAGGCTT501350.5296544700523632No Hit
GGAATACCGGGTGCTGTAGGCTTT463910.49010073841027596No Hit
TGGGAATACCGGGTGCTGTAGGCTT435090.459653661863135No Hit
CGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCCA406160.4290903751001653No Hit
CCTGGGAATACCGGGTGCTGTAGGCTT374040.3951569920781609No Hit
CGCCTGGGAATCCCGGGTGCTGTAGGCTT346080.3656184681274995No Hit
ATACCGGGTGCTGTAGGCTTT343790.36319918272524576No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCT317900.33584752374518057No Hit
CCGGGCGCGGTGGCGCGTGCCTGT308800.3262337695266177No Hit
GGAATCCCGGGTGCTGTAGGCTT308710.3261386884409396No Hit
AATACCGGGTGCTGTAGGCTTT302760.31985277222111No Hit
GAATACCGGGTGCTGTAGGCTTT259050.2736750582767821No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTT255380.2697978628941309No Hit
AGACCGCCTGGGAATACCGGGTGCTGTAGGCTTT248060.26206460125897924No Hit
GATGGGAGACCGCCTGGGAATACCGGGTGCTGTAGGCTT236720.2500843844635393No Hit
GGGAGACCGCCTGGGAATACCGGGTGCTGTAGGCTT215180.22732831129124867No Hit
GGGAATACCGGGTGCTGTAGGCTTT213060.22508862349527578No Hit
GGAGACCGCCTGGGAATACCGGGTGCTGTAGGCTTT210580.22246861135659055No Hit
GAGAGAACGCGGTCTGAGTGGT208960.22075715181438482No Hit
GAGACCGGGGTTCGATTCCCCGACGGGGAGCC198600.2098122623963286No Hit
GGAATACCGGGTGCTGTAGGCT198370.2095692773995957No Hit
GGAGACCGGGGTTCGATTCCCCGACGGGGAGCCA198290.20948476087899295No Hit
CGCCTGGGAATACCGGGTGCTGTAGGCTTT194020.20497369159182113No Hit
AGCTTGGGCTGCAGGTCGACCCGTGC187910.19851874233078604No Hit
AGAGAACGCGGTCTGAGTGGT177030.18702449552881195No Hit
GGAGACCGCCTGGGAATACCGGGTGCTGTAGGCT169920.17951308976024247No Hit
AGACCGGGGTTCGATTCCCCGACGGGGAGCCA165050.17436814656855004No Hit
CGCCTGGGAATACCGGGTGCTGTAGGCT159970.16900134751027535No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTT155000.16375075866782948No Hit
AGCTTGGGCTGCAGGTCGACCCG142250.15028093819676608No Hit
GGGAATACCGGGTGCTGTAGGCT136480.14418518414829268No Hit
GAGACCGCCTGGGAATACCGGGTGCTGTAGGCTTT135220.14285404894879936No Hit
GGGAGAGAACGCGGTCTGAGTGGT126140.13326142386038717No Hit
GGAGACCGGGGTTCGATTCCCCGACGGGGAGC123870.13086326758828412No Hit
AGAGGGAGAGAACGCGGTCTGAGTGGT121690.12856019240185917No Hit
GGTACACGGAGTCAAGACCCGCAACGCGG120180.12696494307548223No Hit
GGGAATCCCGGGTGCTGTAGGCTT118220.12489428832071484No Hit
GGGAGTGAGAGGGAGAGAACGCGGTCTGAGTGGT117490.12412307507021475No Hit
GGAGCCCGCCTGGGAATACCGGGTGCTGTAGGCTT116960.12356315312122151No Hit
CCGCCTGGGACTACCGGGTGCTGTAGGCTTT116220.12278137530564606No Hit
GACCGGGGTTCGATTCCCCGACGGGGAGCCA108780.11492133888959025No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTA104650.11055817351347326No Hit
GATCTCGGAAGCTAAGCAGGGTC104220.11010389721523348No Hit
TGACAGTCTCTACGGAGACTG103110.1089312304918703No Hit
CTGGGAATACCGGGTGCTGTAGGCTT100200.10585694205494525No Hit
GAATACCGGGTGCTGTAGGCT99810.10544492401700684No Hit
ACCGCCTGGGACTACCGGGTGCTGTAGGCTT98360.10391306208108197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)