FastQCFastQC Report
Wed 28 Jun 2023
SRR1585501_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585501_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30844021
Total Bases852.4 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTACTTCATAATTTGTGGTAGTGGGTT1910360.6193615287708435No Hit
TCTACTTCATAATTTGTGGTAGTGGGT740260.2400011334449552No Hit
AAACGATTCCGACCGGCGATGCGGCGTCG722020.23408750759182792No Hit
AGCTTGGGCTGCAGGTCGACCCG691500.22419255907003824No Hit
AACTATTCAGACCGGCGATGCGGCGGCT670630.21742625580497432No Hit
CGATTAAAGTCCTACGTGATCTGAGTTC613650.1989526592528257No Hit
ACGATTAAAGTCCTACGTGATCTGAGTTC595320.19300985432476525No Hit
AAACGATTACGACCGGAGATGCGGCGTCG564700.18308248460860535No Hit
ACGATTAAAGTCCTACGTGATCTGAGTT496370.16092908249543728No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG492260.15959657140682146No Hit
CGATTAAAGTCCTACGTGATCTGAGTT408710.13250866351050664No Hit
ACTATGCCGACCTGCGATGAGGCGGCT347160.11255341837563915No Hit
TCTACTTCATAATTTGTGGTAGTGGGTG326200.10575793603564204No Hit
CCTCTAGCATCACCAGTATTAGAGGC316810.10271358588427883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)