FastQCFastQC Report
Wed 28 Jun 2023
SRR1585502.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585502.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27498391
Total Bases788.2 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGG1862580.6773414488142233No Hit
GGAGAGCGACGCTCAGACAGGC500220.181908825138169No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA398790.14502303062022792No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA386270.14047003695598045No Hit
GCTGGTCCGAAGGTAGTGAGTTATCTCAA350390.12742200079997407No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAA347690.12644012516950537No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG344490.1252764207185795No Hit
CCGGGCGCGGTGGCGCGTGCCTGT335930.12216351131235278No Hit
AGCTTGGGCTGCAGGTCGACCCGTGC334610.12168348322634587No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC326600.11877058552262204No Hit
AATACAAGCTTGGGCTGCAGGTCGAC310960.11308298001872182No Hit
TCGACTGCATCCTTTGTGGTAGTGGGGG298130.10841725248579089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)