FastQCFastQC Report
Wed 28 Jun 2023
SRR1585505_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585505_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16905207
Total Bases478.2 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGG734420.4344341953340175No Hit
GGAGAGCGACGCTCAGACAGGC421090.2490889345513486No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG410080.24257614828378024No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT293390.17355007838709102No Hit
CCTCTAGCATCACCAGTATTAGAGGC194660.11514795411851508No Hit
TTGGGGGGCCGGGCCCCCCCTCCCACGGCGC186880.1105458217695885No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT180060.10651156179276597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)