FastQCFastQC Report
Wed 28 Jun 2023
SRR1585506.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585506.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13791684
Total Bases395.4 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCTGGGAATACCGGGTGCTGTAGGCTT388340.2815754769323311No Hit
GGTACACGGAGTCAAGACCCGCAACGCGG295660.21437556138902253No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA288720.20934354354406612No Hit
TCGACTGCATCCTTTGTGGTAGTGGGGG273620.19839491682089005No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC257630.18680097368820225No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG249950.18123240062634846No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA245420.17794781260939563No Hit
TGCTAAGACTTCACCAGTCAAAGCGAA243880.17683119769855515No Hit
TCGACTGCATACTTTGTGGTCGTGGGGG243010.17620038278139202No Hit
CCTCTAGCATCACCAGTATTAGAGGC230580.16718770528675106No Hit
GGTACACGGAGTCGACCCGCAACGCGG228670.1658028127674619No Hit
ACCTCTAGCATCACCAGTATTAGAGGC221510.16061127850667112No Hit
AAACGCTGCCGCCCGGCGATGCGGCGGCG219090.15885659793249324No Hit
GGTACACGGAGTCAAGACCCGCAACGCGT204480.1482632577718573No Hit
TGTACACGGAGTCAAGACCCGCAACGCGG202160.1465810846594223No Hit
TGTACACGGAGTCGACCCGCAACGCGG196990.142832448887315No Hit
TCGACTGCATCATTTGTGGTCGTGGGGG195450.14171583397647453No Hit
GGTACACGGAGTCGACCCGCAACGCGT162240.11763610593166142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)