FastQCFastQC Report
Wed 28 Jun 2023
SRR1585508_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585508_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24627148
Total Bases692.8 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGG1616100.6562270223088764No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT1324070.5376465029568183No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG1260140.511687346013432No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC928610.3770676165993724No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT707760.28739015983499183No Hit
CCTCTAGCATCACCAGTATTAGAGGC605760.24597245283944372No Hit
GGAGAGCGACGCTCAGACAGGC600980.244031505393966No Hit
AAAGCACCCAACTTACACTTAGGAGATT463970.18839777955612236No Hit
AATACAAGCTTGGGCTGCAGGTCGAC429350.1743401225346922No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC377380.15323739476450948No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC372640.1513126895570693No Hit
CTCTAGCATCACCAGTATTAGAGGC349730.14200994772110842No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA342630.13912695046945753No Hit
AATACAAGCTTGGGCTGCAGGTCG316720.1286060407806864No Hit
ACCTCTAGCATCACCAGTATTAGAGGC278600.11312718793097763No Hit
GGTCGGTTTCTATCTACTTCAAATTCCT247560.10052321121390101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)