FastQCFastQC Report
Wed 28 Jun 2023
SRR1585509_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585509_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28610611
Total Bases799.2 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGG2658010.9290294429573699No Hit
GGAGAGCGACGCTCAGACAGGC1977340.6911212067438895No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG1386580.48463837420319333No Hit
CCTCTAGCATCACCAGTATTAGAGGC920960.3218945586307122No Hit
AGCTTGGGCTGCAGGTCGACCCG505520.17668969040891858No Hit
AATACAAGCTTGGGCTGCAGGTCGAC487160.1702724908601218No Hit
ACCTCTAGCATCACCAGTATTAGAGGC454780.15895501148157934No Hit
CTCTAGCATCACCAGTATTAGAGGC453390.15846917774667588No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC412530.14418776306454972No Hit
GGTCGGTTTCTATCTACTTCAAATTCCTC372400.13016149847341604No Hit
GGTCGGTTTCTATCTACTTCAAATTCCT350770.12260136632524206No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT342640.1197597632570657No Hit
AATACAAGCTTGGGCTGCAGGTCG321770.11246526682006197No Hit
GGAGAGATCCTTCCGCAGGTTC312150.10910287794972291No Hit
GGAGAGCGACGCTCAGACAGGCG296810.10374123083215525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)