FastQCFastQC Report
Wed 28 Jun 2023
SRR1585510.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585510.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28544291
Total Bases828 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTTGGGCTGCAGGTCGACCCGTGC849310.2975411090084529No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC771080.27013457787408346No Hit
GCCGCTGGTGTCGTGGTATCCTGCAAGATT331110.1159986772836642No Hit
TCGACTGCATACTTTGTGGTCGTGGGGG330180.11567286782495315No Hit
TCGACTGCATCCTTTGTGGTAGTGGGGG325000.11385814417320787No Hit
AAACGCTGCCGCCCGGCGATGCGGCGGCG315150.11040736657288142No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA312790.10958058127980828No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC306390.10733845167147434No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG290120.1016385378077879No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA288690.1011375619734258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)