FastQCFastQC Report
Wed 28 Jun 2023
SRR1585511.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585511.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19751646
Total Bases568 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTAAGACTTCACCAGTCAAAGCGAA528750.267699208460905No Hit
AGCTTGGGCTGCAGGTCGACCCGTGC460610.23320081779513463No Hit
ACCTCTAGCATCACCAGTATTAGAGGC416440.210838124579592No Hit
CCTCTAGCATCACCAGTATTAGAGGC374370.18953863389410686No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA326300.16520142169417174No Hit
AAGGCCTACTTCACAAAGCGCCTTCC315520.15974364870654326No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC272720.13807456857013334No Hit
TCGACTGCATCCTTTGTGGTAGTGGGGG270060.13672784536539387No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC241670.12235435973285468No Hit
AAACGCTGCCGCCCGGCGATGCGGCGGCG238370.12068361289990719No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA234170.11855720783979218No Hit
TCGACTGCATACTTTGTGGTCGTGGGGG233560.11824837281915644No Hit
AAGGCCTACTTCACAAAGCGCCTTC229790.11633967113424369No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG215430.10906939097632673No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT198180.10033594162228301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)