FastQCFastQC Report
Wed 28 Jun 2023
SRR1585520_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585520_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13411518
Total Bases385.2 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG1210590.902649498736832No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC1163900.8678361390559965No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG736310.5490131691282075No Hit
GGAGAGCGACGCTCAGACAGGC618300.46102163826645126No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC487930.36381414840587023No Hit
TTGGGGGGCCGGGCCCCCCCTCCCCCGGCGC315540.23527538046028795No Hit
TTGGGGGGCCGGGCCCCCCCTCCCCCGGCG292970.21844656212667352No Hit
GGAGAGCGACGCTCAGACAGG277470.20688933199060686No Hit
AGCTTGGGCTGCAGGTCGACCCG254590.1898293690542711No Hit
AATACAAGCTTGGGCTGCAGGTCGAC213730.15936301916009804No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC212530.1584682658592413No Hit
CCTCTAGCATCACCAGTATTAGAGGC206820.15421073140266447No Hit
TTGGGGGGCCGGGCCCCCCCTCCCACGGCGC197540.1472913058760388No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC185970.1386643928002781No Hit
TTGGGGGGCCGGGCCCCCCCTCCCACGGCG178770.13329587299513748No Hit
AATACAAGCTTGGGCTGCAGGTCG146720.10939850358475454No Hit
GGAGAGCGACGCTCAGACAGGCG146160.10898095204435472No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT140010.10439534137746376No Hit
GGTCGGTTTCTATCTACTTCAAATTCCTC137840.10277732915841442No Hit
AAAGCACCCAACTTACACTTAGGAGATT136880.10206152651772901No Hit
TTGGGGGGCCGGGCCACCCCTCCCCCGGCGC136780.10198696374265762No Hit

[OK]Adapter Content

Adapter graph