FastQCFastQC Report
Wed 28 Jun 2023
SRR1585522.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585522.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19451846
Total Bases543.2 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGAAGGTGGCTCGGGGGGC706090.36299382588161555No Hit
GGCCCGGCGGGGGAAGGTGGCTCGGGGGGC395090.203111828049636No Hit
ACGATTAAAGTCCTACGTGATCTGAGTTC374010.19227481031877386No Hit
AGCTTGGGCTGCAGGTCGACCCGTGC370680.19056289053491376No Hit
AAACGCTGCCGCCCGGCGATGCGGCGGCG370640.19054232693390644No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC293150.1507054908824592No Hit
AGCTTGGGCTGCAGGTCGACCCG268350.1379560582579155No Hit
TGCAGCTCAAAACGCTTAGCCTAGCCACACC242310.12456915400214456No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA241360.12408076847822054No Hit
TTGACAGTCTCTACGGAGACTG241340.12407048667771685No Hit
TGCAGCTCAAAACGCTTAGCCTAGCCACAC237930.1223174396918421No Hit
TGACAGTCTCTACGGAGACTG233680.12013255708481345No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC209330.1076144649716022No Hit
TTTTGACAGTCTCTACGGAGACTG202170.10393358039129036No Hit
TGCTAAGACTTCACCAGTCAAAGCGAA200270.10295680934344226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)