FastQCFastQC Report
Wed 28 Jun 2023
SRR1585523_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585523_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21306606
Total Bases606.6 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGGC1224310.5746152155814962No Hit
GGAGAGCGACGCTCAGACAGG1049720.49267349290637846No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG895140.4201232237551114No Hit
AGCTTGGGCTGCAGGTCGACCCG470570.22085638604290142No Hit
CCTCTAGCATCACCAGTATTAGAGGC333590.15656646581815986No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC324950.1525113854360474No Hit
AATACAAGCTTGGGCTGCAGGTCGAC310180.14557926306986668No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC301470.14149132902725098No Hit
GGTCGGTTTCTATCTACTTCAAATTCCTC230540.10820118417733918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)