FastQCFastQC Report
Wed 28 Jun 2023
SRR1585524_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585524_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21221810
Total Bases601.9 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGG2808071.3232000474983048No Hit
GGAGAGCGACGCTCAGACAGGC1587050.7478391334198167No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG983700.4635325639047753No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC842470.39698310370321854No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC638270.30076133939565003No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC371180.17490496804937938No Hit
CCTCTAGCATCACCAGTATTAGAGGC328560.15482185544022872No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT325260.15326685141371071No Hit
GGAGAGCGACGCTCAGACAGGCG296550.1397383163830041No Hit
AATACAAGCTTGGGCTGCAGGTCGAC272830.12856113592572924No Hit
GGTCGGTTTCTATCTACTTCAAATTCCTC243850.11490537329285297No Hit
AATACAAGCTTGGGCTGCAGGTCG233750.11014611854502515No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACCC219660.10350672256513463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)