FastQCFastQC Report
Wed 28 Jun 2023
SRR1585534_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585534_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16823087
Total Bases480.8 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGG1359200.807937330407909No Hit
GGAGAGCGACGCTCAGACAGGC1226760.7292121832336717No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC1067780.6347110967208337No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG716160.42570070522728676No Hit
AATACAAGCTTGGGCTGCAGGTCGAC252680.1501983553910171No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT250040.14862908335432135No Hit
CCTCTAGCATCACCAGTATTAGAGGC248450.14768395360494777No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAGC215560.12813343948111308No Hit
GGAGAGCGACGCTCAGACAGGCG204850.12176718815042685No Hit
GGTCGGTTTCTATCTACTTCAAATTCCTC192130.11420615015543818No Hit
AATACAAGCTTGGGCTGCAGGTCG187930.11170958100614947No Hit
GGTCGGTTTCTATCTACTTCAAATTCCT168460.10013619973551822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)