FastQCFastQC Report
Wed 28 Jun 2023
SRR1585535_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585535_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17427150
Total Bases499.6 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCTGGGAATACCGGGTGCTGTAGGCTT337090.19342807056805042No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG236420.13566188389954756No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG229710.13181156987803513No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC222060.12742186760313648No Hit
TGGCAATTTTTGACAGTCTCTACGGAGACTG202600.11625538312345965No Hit
GGAGAGCGACGCTCAGACAGGC194140.1114008888429835No Hit
GGCAATTTTTGACAGTCTCTACGGAGACTG177430.10181240191310685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)