FastQCFastQC Report
Wed 28 Jun 2023
SRR1585538.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585538.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21062981
Total Bases617.9 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG902330.4283961515229018No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC831970.39499157313012817No Hit
ACGATTAAAGTCCTACGTGATCTGAGTTC660700.3136782965336198No Hit
CGATTAAAGTCCTACGTGATCTGAGTTC545100.2587952768888696No Hit
GGTCGGTTTCTATCTACTTCAAATTCCTC510050.24215470735125288No Hit
GGTCGGTTTCTATCTACTTCAAATTCCT460820.21878194734164172No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG437160.207548969445493No Hit
ACGATTAAAGTCCTACGTGATCTGAGTT422230.200460704019056No Hit
CGATTAAAGTCCTACGTGATCTGAGTT336420.15972098156476522No Hit
TTGGGGGGCCGGGCCCCCCCTCCCCCGGCG254180.12067617589362115No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC247320.1174192769769863No Hit
TTGGGGGGCCGGGCCCCCCCTCCCCCGGCGC243890.1157908275186689No Hit
AAACGCTGCCGCCCGGCGATGCGGCGGCG231490.10990372160521818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)