FastQCFastQC Report
Wed 28 Jun 2023
SRR1585540.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585540.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15519867
Total Bases449.1 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG706710.4553582836760135No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC597270.3848422154648619No Hit
ACGATTAAAGTCCTACGTGATCTGAGTTC462870.298243535205553No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG428150.27587220947189817No Hit
GGTCGGTTTCTATCTACTTCAAATTCCTC375330.24183841266165487No Hit
CGATTAAAGTCCTACGTGATCTGAGTTC363010.23390020030455158No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC255830.1648403301394271No Hit
GGTCGGTTTCTATCTACTTCAAATTCCT249390.16069081004366853No Hit
ACGATTAAAGTCCTACGTGATCTGAGTT239520.15433121946212555No Hit
ACTATGCCGACCTGCGATGAGGCGGCT211870.1365153451379448No Hit
AAACGCTGCCGCCCGGCGATGCGGCGGCG200100.12893151726106933No Hit
TTGGGGGGCCGGGCCCCCCCTCCCCCGGCG199570.12859001948921342No Hit
CCTCTAGCATCACCAGTATTAGAGGC197150.12703072777621097No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC191040.12309383836858911No Hit
TTGGGGGGCCGGGCCCCCCCTCCCCCGGCGC178630.11509763582381215No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT177640.11445974375940207No Hit
CGATTAAAGTCCTACGTGATCTGAGTT170480.10984630216225437No Hit
GGGGGGGGGCCACGCGCGCGTCCCCC156620.10091581326051313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)