FastQCFastQC Report
Wed 28 Jun 2023
SRR1585541.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585541.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35449232
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length21-48
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATACAAGCTTGGGCTGCAGGTCGACCCG1078020.3041024979046091No Hit
AATACAAGCTTGGGCTGCAGGTCGAC942590.26589856728066774No Hit
GATCAAAAGGAACAAGCATCAAGCACGCAGC678390.19136944913221252No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA610910.1723337758064829No Hit
AAAGCACCCAACTTACACTTAGGAGATT601170.16958618454696No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAA505610.14262932409932041No Hit
GCTGGTCCGAAGGTAGTGAGTTATCTCAA504630.14235287241201727No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA469370.13240625354027416No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC404020.11397143949409116No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC381380.10758484133027199No Hit
TGGTCCGATGGTAGTGGGTTATCAGAA381380.10758484133027199No Hit
AATACAAGCTTGGGCTGCAGGTCGACC379310.10700090766423374No Hit
AATACAAGCTTGGGCTGCAGGTCGACCC374610.10567506793941261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)