FastQCFastQC Report
Wed 28 Jun 2023
SRR1585544.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585544.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13895642
Total Bases410.2 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG870140.6261963283164607No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC852150.6132498232179557No Hit
TTGGGGGGCCGGGCCCCCCCTCCCCCGGCGC263180.18939751038491062No Hit
TTGGGGGGCCGGGCCCCCCCTCCCCCGGCG251690.1811287308639644No Hit
ACGATTAAAGTCCTACGTGATCTGAGTTC244320.17582490970910158No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG238380.17155018818130172No Hit
GGTCGGTTTCTATCTACTTCAAATTCCTC209750.15094660613737745No Hit
CGATTAAAGTCCTACGTGATCTGAGTTC208330.14992470301120306No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC196420.14135367045293767No Hit
TTGGGGGGCCGGGCCACCCCTCCCCCGGCGC172020.1237942082848709No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC171070.12311054070045847No Hit
TTGGGGGGCCGGGCCACCCCTCCCCCGGCG167660.12065653389746224No Hit
GGTCGGTTTCTATCTACTTCAAATTCCT157580.11340246100180187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)