FastQCFastQC Report
Wed 28 Jun 2023
SRR1585546.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585546.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11251060
Total Bases319.6 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCTGGGAATACCGGGTGCTGTAGGCTT448790.3988868604380387No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC329780.2931101602871196No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCG317410.2821156406596356No Hit
ACCTCTAGCATCACCAGTATTAGAGGC265950.2363777279651873No Hit
CCTCTAGCATCACCAGTATTAGAGGC260340.23139153110906885No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT227540.20223872239593424No Hit
TCGACTGCATCCTTTGTGGTAGTGGGGG202140.1796630717461288No Hit
TGGCAATTTTTGACAGTCTCTACGGAGACTG187140.1663309945907319No Hit
CTCTAGCATCACCAGTATTAGAGGC181200.1610514920371947No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC180590.16050932089954192No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC156440.13904467667935289No Hit
GGCAATTTTTGACAGTCTCTACGGAGACTG117390.10433683581813624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)