FastQCFastQC Report
Wed 28 Jun 2023
SRR1585547.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585547.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34345702
Total Bases983.2 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCAGCTCAAAACGCTTAGCCTAGCCACAC1209740.352224566555664No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT1157770.3370931244905112No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC903930.2631857692121128No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA895880.2608419533832792No Hit
TGCAGCTCAAAACGCTTAGCCTAGCCACACC762320.2219549916318496No Hit
TGGTCCGATGGTAGTGGGTTATCAGAA721600.21009906858214747No Hit
ATGCAGCTCAAAACGCTTAGCCTAGCCACAC660240.19223365997876532No Hit
CGGGGGAAGGTGGCTCGGGGGGC612690.17838913294012743No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA533390.15530036334677333No Hit
CCTCTAGCATCACCAGTATTAGAGGC480570.13992143762267545No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG464750.13531532999383736No Hit
ACCTCTAGCATCACCAGTATTAGAGGC433000.12607108743912118No Hit
AATACAAGCTTGGGCTGCAGGTCGAC413930.12051871876137515No Hit
TGGGGGGGCCGGGCCCCCCCTCCCCCGGCGC397640.11577576722700267No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT363780.10591718288361088No Hit
GCAGCTCAAAACGCTTAGCCTAGCCACAC356340.1037509729747262No Hit
TCGACTGCCTAATTTGTGGTCGTGGGGG348920.1015905862107579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)