FastQCFastQC Report
Wed 28 Jun 2023
SRR1585549.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585549.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26502417
Total Bases761.9 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAAAAGGGACAAGCATCAAGCACGCAAC1114340.42046731058529496No Hit
GGAGAGCGACGCTCAGACAGG792160.29890103985610067No Hit
TCGACTGCCTAATTTGTGGTCGTGGGGG595790.22480591109859904No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA568420.2144785511449767No Hit
TGGTCCGATGGTAGTGGGTTATCAGAA353910.13353876365314152No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA328310.12387926731361898No Hit
ACCTCTAGCATCACCAGTATTAGAGGC326460.12318121777345817No Hit
CCTCTAGCATCACCAGTATTAGAGGC322170.12156249748843662No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT278340.1050243832477619No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAA270670.10213030758666275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)