FastQCFastQC Report
Wed 28 Jun 2023
SRR1585550.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585550.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16183217
Total Bases451.3 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTTGGGCTGCAGGTCGACCCG858560.5305249259155334No Hit
GGAGAGCGACGCTCAGACAGG509480.3148199767697609No Hit
GGAGAGCGACGCTCAGACAGGC493470.30492701173073317No Hit
AAGCCAGAGGCCACTCTGGTGGAGGT370860.2291633363131694No Hit
CGGGGGAAGGTGGCTCGGGGGGC340990.21070594307670718No Hit
GGAATACCGGGTGCTGTAGGCTT325970.20142472290892474No Hit
AAGCCCGAGGACACTCTGGTGGAGGT281470.17392709990850397No Hit
AATCCATAGGAAACTCTGGTGGAGGT239480.14798046643012944No Hit
GATGGGAGACCGCCTGGGAAT209760.1296157618105226No Hit
GGGGGGAGAGAAGGGTCGGGGCGGC198590.1227135494753608No Hit
CTTGGATGGGAGACCGCCTGGGAAT191220.11815944876720123No Hit
AGCTTGGGCTGCAGGTCGACCC189900.11734378893887415No Hit
GGGAATACCGGGTGCTGTAGGCTT178920.11055898218506247No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG176540.10908832279762422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)