FastQCFastQC Report
Wed 28 Jun 2023
SRR1585552.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585552.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24341022
Total Bases710.2 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTTGGGCTGCAGGTCGACCCGTGC1101640.45258576242197224No Hit
TCGACTGCCTAATTTGTGGTCGTGGGGG486270.1997738632338445No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT421750.17326717012950402No Hit
CGATCAAAAGGGACAAGCATCAAGCACGCAGC332520.13660889012794944No Hit
GGAGAGCGACGCTCAGACAGGCGT326390.13409050778558107No Hit
AATACAAGCTTGGGCTGCAGGTCGAC325820.13385633520235923No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG307460.12631351304805524No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAGC298120.1224763693159638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)