FastQCFastQC Report
Wed 28 Jun 2023
SRR1585553.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585553.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19920664
Total Bases566.6 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGAGCGACGCTCAGACAGG670880.3367759227302865No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT621830.3121532495101569No Hit
GGAGAGCGACGCTCAGACAGGC614740.30859413119964274No Hit
TCGACTGCCTAATTTGTGGTCGTGGGGG477210.23955526783645364No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG476540.23921893366606653No Hit
GATCAAAAGGGACAAGCATCAAGCACGCAAC452300.22705066457624104No Hit
AAAGCACCCAACTTACACTTAGGAGATT390260.19590712438099456No Hit
AATACAAGCTTGGGCTGCAGGTCGAC368400.18493359458299183No Hit
AGCTTGGGCTGCAGGTCGACCCGTGC348660.17502428633904976No Hit
GGAGAGCGACGCTCAGACAGGCGT208210.10451960838253183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)