FastQCFastQC Report
Wed 28 Jun 2023
SRR1585554.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585554.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22420150
Total Bases647.8 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAAAAGGGACAAGCATCAAGCACGCAAC2019300.9006630196497347No Hit
CGGGGGAAGGTGGCTCGGGGGGC1359180.60623144805008No Hit
CGGGGGAAGGTGGCTCGGGGGG520470.23214385273961144No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA322350.14377691496265635No Hit
GGCCCGGCGGGGGAAGGTGGCTCGGGGGGC310560.13851825255406408No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG305240.13614538707368148No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA303030.13515966663916165No Hit
GATCCAAAGGGACAAGCATCAAGCACGCAAC292980.130677091812499No Hit
AAAAGGGACAAGCATCAAGCACGCAAC272200.12140864356393691No Hit
AAAGGGACAAGCATCAAGCACGCAAC262540.11710001940218955No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT258190.11515980044736543No Hit
GGAGAGCGACGCTCAGACAGGCGT245060.10930346139521813No Hit
CGATCAAAAGGGACAAGCATCAAGCACGCAAC237480.10592257411301886No Hit
ATCAAAAGGGACAAGCATCAAGCACGCAAC230140.10264873339384437No Hit
AATACAAGCTTGGGCTGCAGGTCGAC225770.10069959389210152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)