FastQCFastQC Report
Wed 28 Jun 2023
SRR1585555.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1585555.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21511072
Total Bases618 Mbp
Sequences flagged as poor quality0
Sequence length21-48
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCTGGGAATACCGGGTGCTGTAGGCTT617000.2868290339040286No Hit
TCGACTGCCTAATTTGTGGTCGTGGGGG569740.26485895263611225No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA444190.20649366056698615No Hit
CCTCTAGCATCACCAGTATTAGAGGC360580.16762530477328139No Hit
ACCTCTAGCATCACCAGTATTAGAGGC359260.16701166729394054No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG319360.14846307985022783No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAA291170.1353582006512739No Hit
TGGTCCGATGGTAGTGGGTTATCAGAA274840.12776676122882208No Hit
AATACAAGCTTGGGCTGCAGGTCGAC264590.12300177322636455No Hit
GGAGAGCGACGCTCAGACAGGCGT260100.12091447604284901No Hit
CTGGTCCGAAGGTAGTGAGTTATCTCAA231080.10742374903491561No Hit
GGAGAGCGACGCTCAGACAGGC225970.10504822818686117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)